YRC Public Data Repository - Protein Structure Prediction

Protein:	CX6A1_RAT
Organism:	Rattus norvegicus
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX6A1_RAT.

Description	E-value	Query Range	Subject Range
gi\|13277855, gi\|... - gi\|74151378\|dbj\|BAE38808.1\| unnamed protein product [Mus musculus], gi\|6680988\|ref\|NP_031774.1\| cyto...	199.0	[0..1]	[111..2]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	196.0	[0..4]	[111..2]
gi\|114607227, gi... - gi\|55626522\|ref\|XP_518442.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-live...	190.0	[0..4]	[111..2]
CX6A1_RABIT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1	187.0	[0..4]	[110..2]
gi\|76638499 - gi\|76638499\|ref\|XP_587918.2\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...	187.0	[0..4]	[111..18]
gi\|73995307 - gi\|73995307\|ref\|XP_534704.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIa-liver, mitoc...	186.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAVLSASR VSGLLGRALP RVGRPMSSGA HGEEGSARIW KALTYFVALP GVGVSMLNVF  60
   61 LKSRHEEHER PEFVAYPHLR IRTKPFPWGD GNHTLFHNPH MNPLPTGYED E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1occG
Description:	Mitochondrial cytochrome c oxidase subunit VIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	12.2317532545955	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.9189904362651	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.77104248101315	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.61858135414369	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.0189825255034	bayes_pls_golite062009
oxidoreductase activity	4.93709142475202	bayes_pls_golite062009
cation transmembrane transporter activity	4.77145907631723	bayes_pls_golite062009
ion transmembrane transporter activity	4.57436007698077	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.16699951799043	bayes_pls_golite062009
substrate-specific transporter activity	3.97113110639524	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: