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Protein Overview: gi|114621389, gi...

General Information:
Name(s) found: gi|114621399 [NCBI NR]
gi|114621397 [NCBI NR]
gi|114621395 [NCBI NR]
gi|114621393 [NCBI NR]
gi|114621391 [NCBI NR]
gi|114621389 [NCBI NR]
gi|114621387 [NCBI NR]
gi|114621385 [NCBI NR]
Description(s) found:
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  • gi|114621399|ref|XP_001138797.1| PREDICTED: RAD21 homolog isoform 8 [Pan troglodytes] [NCBI NR]
  • gi|114621397|ref|XP_001138709.1| PREDICTED: RAD21 homolog isoform 7 [Pan troglodytes] [NCBI NR]
  • gi|114621395|ref|XP_001138537.1| PREDICTED: RAD21 homolog isoform 5 [Pan troglodytes] [NCBI NR]
  • gi|114621393|ref|XP_001138450.1| PREDICTED: RAD21 homolog isoform 4 [Pan troglodytes] [NCBI NR]
  • gi|114621391|ref|XP_001138363.1| PREDICTED: RAD21 homolog isoform 3 [Pan troglodytes] [NCBI NR]
  • gi|114621389|ref|XP_001138294.1| PREDICTED: RAD21 homolog isoform 2 [Pan troglodytes] [NCBI NR]
  • gi|114621387|ref|XP_001138209.1| PREDICTED: RAD21 homolog isoform 1 [Pan troglodytes] [NCBI NR]
  • gi|114621385|ref|XP_519916.2| PREDICTED: RAD21 homolog isoform 9 [Pan troglodytes] [NCBI NR]
  • [chimp_Ens_120109_contam.fas]
  • PREDICTED: RAD21 homolog isoform 8 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 9 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 1 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 4 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 2 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 5 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 3 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: RAD21 homolog isoform 7 [Pan troglodytes] [nr-271106-contam.fasta]
    • Organism: Pan troglodytes
    Length: 631 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYAHFVLSK RGPLAKIWLA AHWDKKLTKA HVFECNLESS VESIISPKVK MALRTSGHLL  60
   61 LGVVRIYHRK AKYLLADCNE AFIKIKMAFR PGVVDLPEEN REAAYNAITL PEEFHDFDQP 120
  121 LPDLDDIDVA QQFSLNQSRV EEITMREEVG NISILQENDF GDFGMDDREI MREGSAFEDD 180
  181 DMLVSTTTSN LLLESEQSTS NLNEKINHLE YEDQYKDDNF GEGNDGGILD DKLISNNDGG 240
  241 IFDDPPALSE AGVMLPEQPA HDDMDEDDNV SMGGPDSPDS VDPVEPMPTM TDQTTLVPNE 300
  301 EEAFALEPID ITVKETKAKR KRKLIVDSVK ELDSKTIRAQ LSDYSDIVTT LDLAPPTKKL 360
  361 MMWKETGGVE KLFSLPAQPL WNNRLLKLFT RCLTPLVPED LRKRRKGGEA DNLDEFLKEF 420
  421 ENPEVPREDQ QQQHQQRDVI DEPIIEEPSR LQESVMEASR TNIDESAMPP PPPQGVKRKA 480
  481 GQIDPEPVMP PQQVEQMEIP PVELPPEEPP NICQLIPELE LLPEKEKEKE KEKEDDEEEE 540
  541 DEDASGGDQD QEERRWNKRT QQMLHGLQRA LAKTGAESIS LLELCRNTNR KQAAAKFYSF 600
  601 LVLKKQQAIE LTQEEPYSDI IATPGPRFHI I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] Pfam 67.920819 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [145..305] MSA 1.121984 View MSA. No confident structure predictions are available.
    3 View Details [306..411] MSA 2.116986 View MSA. No confident structure predictions are available.
    4 View Details [412..547] deduced N/A No confident structure predictions are available.
    5 View Details [548..631] PSI-BLAST 6.0 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • transcription regulator activity
    		•  2.18423275686836 bayes_pls_golite062009
  • DNA binding
    		•  2.00689495715419 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.95069166062856 bayes_pls_golite062009
  • binding
    		•  1.5962792529649 bayes_pls_golite062009
  • transcription factor activity
    		•  1.3352343070618 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle