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Protein Overview: gi|126941298, gi...

General Information:
Name(s) found: gi|254900996 [NCBI NR]
gi|153186159 [NCBI NR]
gi|126941298 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|254900996|ref|ZP_05260920.1| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161] [NCBI NR]
  • gi|153186159|ref|ZP_01936543.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes J0161] [NCBI NR]
  • gi|126941298|gb|EBA19187.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes J0161] [NCBI NR]
    • Organism: Listeria monocytogenes J0161
    Length: 648 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTEKRVHK YIEKHDLIRS DDKLLVAVSG GPDSLALLHF LWNSNLVPKE AISVAHLNHQ  60
   61 LRENAAKEQR VVETFCERQG IPFYIEEVDI KSRAQSLQKG LEETARIVRY DFFEKVMAEK 120
  121 NINKLVLAHH ADDQIETILM RLVRGSASIG WSGIQPKREL KGGQAIRPFL PITKAEIIDY 180
  181 AQKHELAYEI DESNTSQEYT RNRYRAQLLP FLKQENPAVY SHFERFSEET SEDFQFLEAL 240
  241 ASDLLKKNLI KNGKQTTLLL SSFKNEANPL QRRAIHLLLR YLYNEDASFI TVNHIYQIIQ 300
  301 MIQSDNPSSS IDLPNKLIAN RAYDKLHFQF GEREAPSEFY HQLELNDRIE LDNKASIRLK 360
  361 LKSSVVQTNG LNGMLLDAEE ITLPLIVRNR VNGDRMTMKG QAGSKKLKDI FIDAKIPRQE 420
  421 RDKLPVITDY TGKILWVPGV KKSAYDREFS RSKKQYIIRY TRNIGGNESM HNDIQKVLIS 480
  481 EDELQEKIRE LGRELTTEYE GRNPLVVGVL KGATPFMTDL LKRVDTYLEM DFMDVSSYGN 540
  541 GTVSSGEVKI IKDLNASVEG RDVLVIEDII DSGRTLSYLV DLIKYRKAKS VKLVTLLDKP 600
  601 AGRNVEIEAD YVGFVVPNEF VVGYGLDYAE RYRNLPYIGI LKPEIYSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..450] PSI-BLAST 59.30103 Putative cell cycle protein MesJ, N-terminal domain; Putative cell cycle protein MesJ, middle and C-terminal domain
    2 View Details [451..648] PSI-BLAST 35.045757 Crystal Structure of Hypoxanthine-Guanine Phosphoribosyltransferase from Thermoanaerobacter tengcongensis

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  5.31600041149223 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  5.31600041149223 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  5.31492510480447 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  4.77782949872067 bayes_pls_golite062009
  • ligase activity
    		•  3.71561290487771 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  1.9422825865652 bayes_pls_golite062009
  • carbon-nitrogen ligase activity, with glutamine as amido-N-donor
    		•  1.77152913449838 bayes_pls_golite062009
  • GMP synthase (glutamine-hydrolyzing) activity
    		•  1.72090211279097 bayes_pls_golite062009
  • protein binding
    		•  1.04733916422551 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • binding
    		•  0.705046204987053 bayes_pls_golite062009
  • DNA binding
    		•  0.413404324688042 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.083007846379087 bayes_pls_golite062009
  • transferase activity
    		•  0.0776944314618701 bayes_pls_golite062009
    2
    Term Confidence Notes
  • adenine phosphoribosyltransferase activity
    		•  4.07252508868782 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  3.91023158228049 bayes_pls_golite062009
  • hypoxanthine phosphoribosyltransferase activity
    		•  3.89356447922614 bayes_pls_golite062009
  • transferase activity
    		•  3.88709784255536 bayes_pls_golite062009
  • nucleobase binding
    		•  2.70671399975507 bayes_pls_golite062009
  • purine binding
    		•  2.63033967717893 bayes_pls_golite062009
  • transferase activity, transferring pentosyl groups
    		•  2.53679639481311 bayes_pls_golite062009
  • uracil phosphoribosyltransferase activity
    		•  2.36237864658341 bayes_pls_golite062009
  • catalytic activity
    		•  2.30431811394775 bayes_pls_golite062009
  • amidophosphoribosyltransferase activity
    		•  1.6596316647688 bayes_pls_golite062009
  • ribose phosphate diphosphokinase activity
    		•  1.51875493459374 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.18942699821229 bayes_pls_golite062009
  • protein binding
    		•  1.02514711359042 bayes_pls_golite062009
  • adenine binding
    		•  0.817887117933035 bayes_pls_golite062009
  • diphosphotransferase activity
    		•  0.749909396904601 bayes_pls_golite062009
  • binding
    		•  0.644392905117932 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.369893745269311 bayes_pls_golite062009
  • DNA binding
    		•  0.275043319532312 bayes_pls_golite062009
  • orotate phosphoribosyltransferase activity
    		•  0.148898393751978 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.00921141240853085 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle