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Protein Overview: APOM_MOUSE

General Information:
Name(s) found: APOM_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|9055162|ref|NP_061286.1| apolipoprotein M [Mus musculus] [NCBI NR]
  • gi|6683947|gb|AAF23407.1| apolipoprotein M [Mus musculus] [NCBI NR]
  • gi|3941735|gb|AAC82478.1| NG20 [Mus musculus] [NCBI NR]
  • gi|18203656|sp|Q9Z1R3.1|APOM_MOUSE RecName: Full=Apolipoprotein M; Short=Apo-M; Short=ApoM [NCBI NR]
  • gi|148694705|gb|EDL26652.1| apolipoprotein M [Mus musculus] [NCBI NR]
  • gi|12835759|dbj|BAB23349.1| unnamed protein product [Mus musculus] [NCBI NR]
  • Apolipoprotein M OS=Mus musculus GN=Apom PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):17-33746434 Apolipoprotein M [hmr_yeast5_DM3-1_pombe.fasta]
  • apolipoprotein M [HMR_022704-rand.fasta]
  • Apolipoprotein M [ipi.MOUSE.v3.06.fasta]
  • apolipoprotein M [Mus musculus]gi|3941735|gb|AAC82478.1| NG20 [Mus musculus]gi|6683947|gb|AAF23407.1| apolipoprotein M [Mus musculus]gi|18203656|sp|Q9Z1R3|APOM_MOUSE Apolipoprotein M (Apo-M) (ApoM) (NG20)gi|12835759|dbj|BAB23349.1| unnamed protein pro [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Apolipoprotein M [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_018816) apolipoprotein M [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • apolipoprotein M [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Apolipoprotein M (Apo-M) (ApoM) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • NG20 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Apom Apolipoprotein M [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Apom Apolipoprotein M ENSMUSG00000024391 IPI00130382 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • IPI:IPI00130382.3|SWISS-PROT:Q9Z1R3|TREMBL:Q8VC79|ENSEMBL:ENSMUSP00000025249|REFSEQ:NP_061286 Tax_Id=10090 Gene_Symbol=Apom Apolipoprotein M [ipi.MOUSE.fasta.20090209]
  • Apolipoprotein M OS=Mus musculus GN=Apom [011711_HMR.fasta]
  • Apolipoprotein M OS=Mus musculus GN=Apom PE=2 SV=1 [UniProt_mouse_sprotvarsplic_11-08-2010_reversed.fasta]
  • sp|Q9Z1R3|APOM_MOUSE Apolipoprotein M OS=Mus musculus GN=Apom PE=1 SV=1 [uniprot.sptr.mouse.20130102]
    • Organism: Mus musculus
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [UNKNOWN]
    discoidal high-density lipoprotein particle [IDA]
    high-density lipoprotein particle [IEA]
    extracellular region [IDA]
    Biological Process: lipid transport [IEA]
    high-density lipoprotein particle assembly [IMP]
    reverse cholesterol transport [IMP]
    high-density lipoprotein particle remodeling [IMP]
    high-density lipoprotein particle clearance [IMP]
    cholesterol efflux [IMP]
    lipoprotein metabolic process [IMP]
    transport [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHQVWAALL SLYGLLFNSM NQCPEHSQLT ALGMDDTETP EPHLGLWYFI AGAASTTEEL  60
   61 ATFDPVDNIV FNMAAGSAPR QLQLRATIRT KSGVCVPRKW TYRLTEGKGN MELRTEGRPD 120
  121 MKTDLFSSSC PGGIMLKETG QGYQRFLLYN RSPHPPEKCV EEFQSLTSCL DFKAFLVTPR 180
  181 NQEACPLSSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] FFAS03 6.54 Complement protein C8gamma

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.0790253220851 bayes_pls_golite062009
  • lipid transporter activity
    		•  2.0622452030785 bayes_pls_golite062009
  • binding
    		•  2.00683433708395 bayes_pls_golite062009
  • lipid binding
    		•  0.974664962702851 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.92165376847661 bayes_pls_golite062009
  • prostaglandin-D synthase activity
    		•  0.151761237567045 bayes_pls_golite062009
  • protein binding
    		•  0.113932394283891 bayes_pls_golite062009
  • fatty acid transporter activity
    		•  0.0209836240489655 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle