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Protein Overview: SARNP_MOUSE

General Information:
Name(s) found: SARNP_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|82999029|ref|XP_921673.1| PREDICTED: similar to cytokine induced protein 29 kDa isoform 1 [Mus musculus] [NCBI NR]
  • gi|82998334|ref|XP_897232.1| PREDICTED: similar to cytokine induced protein 29 kDa isoform 1 [Mus musculus] [NCBI NR]
  • gi|74226724|dbj|BAE27010.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|26353232|dbj|BAC40246.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|20380578|gb|AAH27510.1| RIKEN cDNA 1110005A23 gene [Mus musculus] [NCBI NR]
  • gi|187957432|gb|AAI57910.1| RIKEN cDNA 1110005A23 gene [Mus musculus] [NCBI NR]
  • gi|187956892|gb|AAI58024.1| RIKEN cDNA 1110005A23 gene [Mus musculus] [NCBI NR]
  • gi|18202843|sp|Q9D1J3.3|SARNP_MOUSE RecName: Full=SAP domain-containing ribonucleoprotein; AltName: Full=Nuclear protein Hcc-1 [NCBI NR]
  • gi|149270714|ref|XP_001479651.1| PREDICTED: hypothetical protein [Mus musculus] [NCBI NR]
  • gi|149270448|ref|XP_001478270.1| PREDICTED: hypothetical protein [Mus musculus] [NCBI NR]
  • gi|148709659|gb|EDL41605.1| mCG113697 [Mus musculus] [NCBI NR]
  • gi|148692682|gb|EDL24629.1| mCG18674, isoform CRA_c [Mus musculus] [NCBI NR]
  • gi|13384730|ref|NP_079640.1| cytokine induced protein 29 kDa [Mus musculus] [NCBI NR]
  • gi|12834134|dbj|BAB22799.1| unnamed protein product [Mus musculus] [NCBI NR]
  • SAP domain-containing ribonucleoprotein OS=Mus musculus GN=Sarnp PE=1 SV=3 [Swiss-Prot]
  • Nuclear protein Hcc-1 OS=Mus musculus GN=Hcc1 PE=1 SV=3 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):19-22967959;10-128850661 Nuclear protein Hcc-1 [hmr_yeast5_DM3-1_pombe.fasta]
  • RIKEN cDNA 1110005A23 [HMR_022704-rand.fasta]
  • RIKEN cDNA 1110005A23 [Mus musculus]gi|20380578|gb|AAH27510.1| RIKEN cDNA 1110005A23 [Mus musculus]gi|26353232|dbj|BAC40246.1| unnamed protein product [Mus musculus]gi|18202843|sp|Q9D1J3|HCC1_MOUSE Nuclear protein Hcc-1gi|12834134|dbj|BAB22799.1| unna [nrdb_11152004_Chlamydomonas]
  • (NM_025364) RIKEN cDNA 1110005A23 [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • PREDICTED: similar to cytokine induced protein 29 kDa isoform 1 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • cytokine induced protein 29 kDa [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Nuclear protein Hcc-1 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • RIKEN cDNA 1110005A23 gene [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: hypothetical protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • mCG113697 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • mCG18674, isoform CRA_c [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 RIKEN CDNA 1110005A23 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=1110005A23Rik;EG625193 Nuclear protein Hcc-1 [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=1110005A23Rik Nuclear protein Hcc-1 [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=EG625193;1110005A23Rik Nuclear protein Hcc-1 ENSMUSG00000051255 IPI00133801 IPI00658779 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • SAP domain-containing ribonucleoprotein [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00133801.3|SWISS-PROT:Q9D1J3|TREMBL:B2RXM7|ENSEMBL:ENSMUSP00000051713;ENSMUSP00000100863|REFSEQ:NP_079640;XP_001478270;XP_001479651 Tax_Id=10090 Gene_Symbol=1110005A23Rik;EG625193 Nuclear protein Hcc-1 [ipi.MOUSE.fasta.20090209]
  • SAP domain-containing ribonucleoprotein OS=Mus musculus GN=Sarnp [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=EG625193;1110005A23Rik Nuclear protein Hcc-1 [ipi.MOUSE.v3.53-HA-DAT.fasta]
  • Tax_Id=10090 Gene_Symbol=EG625193;1110005A23Rik Nuclear protein Hcc-1 ENSMUSG00000078427 IPI00133801 [CPP_MOUSE_1_03-15-2011_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Sarnp SAP domain-containing ribonucleoprotein [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Sarnp;Gm6563 SAP domain-containing ribonucleoprotein [EBI-IPI_mouse_3.71_03-24-2010_reversed.fasta]
  • sp|Q9D1J3|SARNP_MOUSE SAP domain-containing ribonucleoprotein OS=Mus musculus GN=Sarnp PE=1 SV=3 [uniprot.sptr.mouse.20130102]
  • tr|B2RXM7|B2RXM7_MOUSE MCG113697 OS=Mus musculus GN=Sarnp PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • MCG113697 OS=Mus musculus GN=Sarnp PE=2 SV=1 [mouse-uniprot-290313-contam.fasta]
  • MCG113697 OS=Mus musculus GN=1110005A23Rik PE=2 SV=1 [mouse-uniprot-oct2014-contam.fasta]
  • Isoform of Q9D1J3, MCG113697 OS=Mus musculus GN=Sarnp PE=1 SV=1 [MOUSE.fasta.20160308]
    • Organism: Mus musculus
    Length: 210 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    cellular_component [ND]
    Biological Process: regulation of translation [IEA]
    transcription [IEA]
    regulation of transcription [IEA]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA]
    RNA binding [IEA]
    protein binding [IPI]
    protein C-terminus binding [IPI]
    RS domain binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAETVELHK LKLAELKQEC LARGLETKGI KQDLINRLQA YLEDHAEEEA NEEDVLGDET  60
   61 EEEEPKPIEL PVKEEEPPEK AVDMASEKKV VKITSGIPQT ERMQKRAERF NVPVSLESKK 120
  121 AARAARFGIS SVPTKGLSSD TKPMVNLDKL KERAQRFGLN VSSISRKSED DEKLKKRKER 180
  181 FGIVTSSAGT GTTEDTEAKK RKRAERFGIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] PSI-BLAST 11.0 No description for 2do1A was found.
    2 View Details [86..210] MSA 2.082989 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.41663142583782 bayes_pls_golite062009
  • DNA binding
    		•  3.10342439340038 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.06883460395012 bayes_pls_golite062009
  • binding
    		•  2.85946414867169 bayes_pls_golite062009
  • transcription factor binding
    		•  1.87393007510949 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.74991817705903 bayes_pls_golite062009
  • protein binding
    		•  1.4634286530239 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.38955445085215 bayes_pls_golite062009
  • transcription activator activity
    		•  1.33699031660219 bayes_pls_golite062009
  • nuclear hormone receptor binding
    		•  1.31532203831033 bayes_pls_golite062009
  • steroid hormone receptor binding
    		•  1.2544110921647 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.11561194099552 bayes_pls_golite062009
  • androgen receptor binding
    		•  1.09329256369933 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.96443772736777 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.960887033303381 bayes_pls_golite062009
  • hormone receptor binding
    		•  0.81375575057479 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.64159955038729 bayes_pls_golite062009
  • SUMO ligase activity
    		•  0.561855067386593 bayes_pls_golite062009
  • catalytic activity
    		•  0.454272578060498 bayes_pls_golite062009
  • chromatin binding
    		•  0.00223433238629989 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle