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Protein Overview: ham-2

General Information:
Name(s) found: ham-2 / CE39670 [WormBase]
Description(s) found:
Found 12 descriptions.
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  • WBGene00001821 locus:ham-2 status:Confirmed UniProt:A3RMS3 protein_id:CCD63273.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 331 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: regulation of neuron differentiation [IMPLink to PubMed article]
    cell fate determination [IMPLink to PubMed article]
    cell migration [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRVHNITRM FMCRCCNWAF PDKTSLHIHM QSMLKNGTPG EAAVLAKSSD VVDSTSESGS  60
   61 PRQSPPFSPD LLMQKRMLQV AANNNNIGSI FPTLLKSPDS KSMFPLDLSN MGPSQFLSAW 120
  121 LANNPINTAA LNLAAQQTPS KDSIQSSNIS DYDDLEVQTT EEDIKFEVES SDVSPRSVIV 180
  181 KTEPTFKREL EHDADIDVEG DDGEPPLKMT IDDKNIHISH DQPSPTVSDS HISGGSSSHS 240
  241 GESLKCFDCQ VARGKLVAVE DKCRAYEKTI RELQVQVDFL RKIQPNPMPP VMLPPPMMPM 300
  301 PSPGPNNLFQ NPAMRMLLNN LIHMNRPSVV P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] FFAS03 2.18 No description for 2dmdA was found.
    2 View Details [113..244] MSA 3.073996 View MSA. No confident structure predictions are available.
    3 View Details [245..331] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.304205134456748 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle