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Protein Overview: ham-2

General Information:
Name(s) found: ham-2 / CE39669 [WormBase]
Description(s) found:
Found 13 descriptions.
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  • WBGene00001821 locus:ham-2 status:Confirmed UniProt:A3RMS1 protein_id:CCD63271.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 390 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: regulation of neuron differentiation [IMPLink to PubMed article]
    cell fate determination [IMPLink to PubMed article]
    cell migration [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYRAELKRP DLKGSFPCSI CQKVFCHSSS LSRHRMQAHF KSYTCTTCNN EIPSNDTLRS  60
   61 HMYRVHNITR MFMCRCCNWA FPDKTSLHIH MQSMLKNGTP GEAAVLAKSS DDSTSESGSP 120
  121 RQSPPFSPDL LMQKRMLQVA ANNNNIGSIF PTLLKSPDSK SMFPLDLSNM GPSQFLSAWL 180
  181 ANNPINTAAL NLAAQQTPSK DSIQSSNISD YDDLEVQTTE EDIKFEVESS DVSPRSVIVK 240
  241 TEPTFKRELE HDADIDVEGD DGEPPLKMTI DDKNIHISHD QPSPTVSDSH ISGGSSSHSG 300
  301 ESLKCFDCQV ARGKLVAVED KCRAYEKTIR ELQVQVDFLR KIQPNPMPPV MLPPPMMPMP 360
  361 SPGPNNLFQN PAMRMLLNNL IHMNRPSVVP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] PSI-BLAST 58.69897 No description for 2i13A was found.
    2 View Details [196..260] PSI-BLAST 18.69897 Transcription factor IIIA, TFIIIA
    3 View Details [261..390] MSA 1.29899 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.7678140110688 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.36521420117645 bayes_pls_golite062009
  • DNA binding
    		•  1.25676119489845 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.23181967524688 bayes_pls_golite062009
  • transcription factor activity
    		•  0.48221167392496 bayes_pls_golite062009
  • protein binding
    		•  0.286371122239253 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle