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Protein Overview: UTP23_SCHPO

General Information:
Name(s) found: UTP23_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 260 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQKRAKNYR KLMHTYQLLF GFREPYQVLV DADFLKDLSQ QKIDIQAALA RTVQGAIKPM  60
   61 ITQCCIRQLY SKSDELKQEI RIAKSFERRR CGHIDEALSP SECIQSVVNI NGRNKHRYVV 120
  121 ATQDPELRQA LRSVPGVPLI YMKRSVVILE PASRATLLEK HNKESVQMGM SKEEKLLLSG 180
  181 KKRSANELAI DDQDTKESTD LAGTEDSAPK ANKKRKGPKG PNPLSIKKRS SKNHTTDEPT 240
  241 LPVNIIGDVG ERKKHRRKRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] PSI-BLAST 18.39794 Hypothetical protein AF0591
    2 View Details [163..260] MSA 1.032995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nuclease activity
    		•  2.9643999717473 bayes_pls_golite062009
  • exonuclease activity
    		•  2.73966722455965 bayes_pls_golite062009
  • DNA binding
    		•  2.08813762501061 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.94354032094901 bayes_pls_golite062009
  • flap endonuclease activity
    		•  1.93047867791632 bayes_pls_golite062009
  • endonuclease activity
    		•  1.76157945742159 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  1.70282544747112 bayes_pls_golite062009
  • 5'-3' exonuclease activity
    		•  1.66809858159343 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.62584843390946 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.54085341767512 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.5104333947608 bayes_pls_golite062009
  • binding
    		•  1.47549397931841 bayes_pls_golite062009
  • catalytic activity
    		•  1.37534898662234 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.0761952249864 bayes_pls_golite062009
  • hydrolase activity
    		•  0.791080797012892 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.50487165366129 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.421194877842092 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.404818231616342 bayes_pls_golite062009
  • 5'-3' exodeoxyribonuclease activity
    		•  0.34527101309477 bayes_pls_golite062009
  • protein binding
    		•  0.257628793674867 bayes_pls_golite062009
  • double-stranded DNA specific exodeoxyribonuclease activity
    		•  0.123105804280941 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
    		•  0.120278857913627 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle