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Protein Overview: YK42_SCHPO

General Information:
Name(s) found: YK42_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19114450|ref|NP_593538.1| hypothetical protein SPAP14E8.02 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Transcription factor P14E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP14E8.02 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 566 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISSQNVLL PSPIPSSSPM ASHKKSWLSK HPNQSMTFEK PQLGQFVLTP EPSSNTFYAP  60
   61 SSPASAVRRE PLSPMSFVRM RSHRVNKIGR SSQQCDHVLS TVDKAISRVH AIVTCTQDRM 120
  121 IIECVGWNGM IVSDKMRKSV FHMKKNDRIV LVRPNSDACP VLDVFGYRVL LGWPSDSEDE 180
  181 WEGNLNAKNY EENREPMSPS PQEALPLMPS SPPSQDYQND QNHLILYTNS ESIPKLNLRS 240
  241 NELVYPPPSK DLLQKLLALE KDGQVEKSDC SKNTQLKPSF LPKNTDDLLN GTDDNNIVLR 300
  301 EVKVSFENEK IESDDLDKNE EISEGEEYTP IEESKEPITV RRDSVIQIDE SSAGLTDVIS 360
  361 ELNFTNHNDD SKNSNITTSN DSPVNEVEPM APELSSAVVE KKEPEDYESI SAVDENTNDS 420
  421 NESLPSSHDY SESTKENSAP DSLLLGLVLD ELVFSTTSTT PLPALSHLFP SNMPLQLIQD 480
  481 KLRDLAAKHP YFEEVKRYGT DANGDPLWSE WFYNPDVDDD LERRMRYAPL MRPVRSSRRV 540
  541 HKQYYWKKPR ARPRSSGHSS RRRRLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..57] deduced N/A No confident structure predictions are available.
    2 View Details [58..192] FFAS03 1.34 Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme
    3 View Details [193..293] MSA 4.199997 View MSA. No confident structure predictions are available.
    4 View Details [294..457] MSA 1.191994 View MSA. No confident structure predictions are available.
    5 View Details [458..566] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.11280039527456 bayes_pls_golite062009
  • protein binding
    		•  0.995798864098011 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.224905356336295 bayes_pls_golite062009
  • DNA binding
    		•  0.180652812080924 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0241112366637728 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle