| Protein: | YK42_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 566 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YK42_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..263] | [549..244] |
|
|
186.0 | [0..11] | [545..29] |
|
|
186.0 | [0..6] | [550..11] |
|
|
177.0 | [0..5] | [476..860] |
|
|
176.0 | [0..16] | [550..32] |
|
|
176.0 | [0..4] | [476..1373] |
|
|
175.0 | [0..336] | [549..306] |
|
|
172.0 | [0..12] | [476..546] |
|
|
171.0 | [0..295] | [549..270] |
|
Region A: Residues: [1-57] |
1 11 21 31 41 51
| | | | | |
1 MNISSQNVLL PSPIPSSSPM ASHKKSWLSK HPNQSMTFEK PQLGQFVLTP EPSSNTF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [58-192] |
1 11 21 31 41 51
| | | | | |
1 YAPSSPASAV RREPLSPMSF VRMRSHRVNK IGRSSQQCDH VLSTVDKAIS RVHAIVTCTQ 60
61 DRMIIECVGW NGMIVSDKMR KSVFHMKKND RIVLVRPNSD ACPVLDVFGY RVLLGWPSDS 120
121 EDEWEGNLNA KNYEE
|
| Detection Method: | |
| Confidence: | 1.34 |
| Match: | 1yj5C |
| Description: | Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11280039527456 | bayes_pls_golite062009 |
| protein binding | 0.995798864098011 | bayes_pls_golite062009 |
| nucleic acid binding | 0.224905356336295 | bayes_pls_golite062009 |
| DNA binding | 0.180652812080924 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0241112366637728 | bayes_pls_golite062009 |
|
Region A: Residues: [193-293] |
1 11 21 31 41 51
| | | | | |
1 NREPMSPSPQ EALPLMPSSP PSQDYQNDQN HLILYTNSES IPKLNLRSNE LVYPPPSKDL 60
61 LQKLLALEKD GQVEKSDCSK NTQLKPSFLP KNTDDLLNGT D
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [294-457] |
1 11 21 31 41 51
| | | | | |
1 DNNIVLREVK VSFENEKIES DDLDKNEEIS EGEEYTPIEE SKEPITVRRD SVIQIDESSA 60
61 GLTDVISELN FTNHNDDSKN SNITTSNDSP VNEVEPMAPE LSSAVVEKKE PEDYESISAV 120
121 DENTNDSNES LPSSHDYSES TKENSAPDSL LLGLVLDELV FSTT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [458-566] |
1 11 21 31 41 51
| | | | | |
1 STTPLPALSH LFPSNMPLQL IQDKLRDLAA KHPYFEEVKR YGTDANGDPL WSEWFYNPDV 60
61 DDDLERRMRY APLMRPVRSS RRVHKQYYWK KPRARPRSSG HSSRRRRLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
