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Protein Overview: YA7D_SCHPO

General Information:
Name(s) found: YA7D_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19113851|ref|NP_592939.1| hypothetical protein SPAC24H6.13 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 871 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSSSSTS AFVSSLVFNF AIFCAFIGLF LCLRPREKHV YQPRCIIDTQ PKEEKPEPSP  60
   61 SSPFGLFAYV VKRSETYLIQ YAGVDGYFFI RYLFTFGALC ILGCLVLFPI LLPVNATNGV 120
  121 GEKGFDILSF SNVKNHNRFY AHVFLSWLFF GFTIFIIYRE LRYYVIFRHA MQSSGLYNNL 180
  181 PSSSTMLLTE LPNSVLNDEE TLHELFPNAS EFTCVRDLKK LEKKVKKRSD LGNKYESTLN 240
  241 SLINKSVKKH NKLVKKHKPL PSTLDYTAYV KKRPTHRLKF LIGKKVDTID YCRDTIAELD 300
  301 EVVDKLQTSL EERKKVGSVF IRFRSQTDLQ TAYQAFLYSK KFRKYRFGRA LVGIAPEDIV 360
  361 WSNLDLSMYT RRGKKTISNT ILTLMIIFWA FPVAVVGCIS NVNYLIEKVH FLKFIDHMPP 420
  421 KLLGIITGIL PSVALSILMS LVPPFIKFLG KFGGALTVQE IENYCQNWYY AFQVVQVFLV 480
  481 TTMTSAATSA VVQVIKEPAS SMTLLASNLP KASNFYISYF LLQGLSIPGG ALLQIVTLLL 540
  541 SKVLGRIFDN TPRKKWNRWN QLSAPSWGTV YPVYSLLVTI MICYSIIAPI IIGFAAVAFV 600
  601 LIYFAYSYNL IYVLGHNADA KGRNYPRALF QVFVGLYLAE VCLIGLFVLA KNWGATVLEA 660
  661 VFLGFTVACH LYFKYKFLPL MDAVPISAIE SVSERPEIKY PMDLGTSEMK NVGRAYPEIL 720
  721 EKLSSSSGSD EFLETSSRTS ENTKEKIDKD DEGFAITNIS SVHKMPSFVL SYFSDLAASN 780
  781 RILTGFDRVL QLLPSFYDIP VRVRNVQYVS PALKATPPSV WIPKDPLGLS TYAIEDARGK 840
  841 VDIFDDNTTF NEKGNLQYTG PPPDYDEAIR S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 2.150994 View MSA. No confident structure predictions are available.
    2 View Details [112..361] FFAS03 1.02 Poly(A)-binding protein
    3 View Details [362..595] deduced N/A No confident structure predictions are available.
    4 View Details [596..676] MSA 2.200996 View MSA. No confident structure predictions are available.
    5 View Details [677..871] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  3.16043509094686 bayes_pls_golite062009
  • binding
    		•  2.45816542782438 bayes_pls_golite062009
  • RNA binding
    		•  2.12977287614929 bayes_pls_golite062009
  • protein binding
    		•  1.45646458884073 bayes_pls_golite062009
  • transporter activity
    		•  1.17508255371693 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.076425286008 bayes_pls_golite062009
  • mRNA binding
    		•  1.01590992981116 bayes_pls_golite062009
  • ligase activity
    		•  0.839455841912248 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.550646307051285 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.502017879414539 bayes_pls_golite062009
  • DNA binding
    		•  0.393909838101373 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.30461161014793 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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