| Protein: | YA7D_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 871 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YA7D_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
859.0 | [0..2] | [869..9] |
|
|
846.0 | [0..4] | [869..11] |
|
|
816.0 | [0..11] | [867..22] |
|
|
814.0 | [0..4] | [869..21] |
|
|
808.0 | [0..8] | [869..32] |
|
|
808.0 | [0..4] | [869..9] |
|
|
803.0 | [0..3] | [867..8] |
|
|
799.0 | [0..4] | [869..7] |
|
|
797.0 | [0..9] | [870..14] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MSDSSSSSTS AFVSSLVFNF AIFCAFIGLF LCLRPREKHV YQPRCIIDTQ PKEEKPEPSP 60
61 SSPFGLFAYV VKRSETYLIQ YAGVDGYFFI RYLFTFGALC ILGCLVLFPI L
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [112-361] |
1 11 21 31 41 51
| | | | | |
1 LPVNATNGVG EKGFDILSFS NVKNHNRFYA HVFLSWLFFG FTIFIIYREL RYYVIFRHAM 60
61 QSSGLYNNLP SSSTMLLTEL PNSVLNDEET LHELFPNASE FTCVRDLKKL EKKVKKRSDL 120
121 GNKYESTLNS LINKSVKKHN KLVKKHKPLP STLDYTAYVK KRPTHRLKFL IGKKVDTIDY 180
181 CRDTIAELDE VVDKLQTSLE ERKKVGSVFI RFRSQTDLQT AYQAFLYSKK FRKYRFGRAL 240
241 VGIAPEDIVW
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.16043509094686 | bayes_pls_golite062009 |
| binding | 2.45816542782438 | bayes_pls_golite062009 |
| RNA binding | 2.12977287614929 | bayes_pls_golite062009 |
| protein binding | 1.45646458884073 | bayes_pls_golite062009 |
| transporter activity | 1.17508255371693 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.076425286008 | bayes_pls_golite062009 |
| mRNA binding | 1.01590992981116 | bayes_pls_golite062009 |
| ligase activity | 0.839455841912248 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.550646307051285 | bayes_pls_golite062009 |
| transcription regulator activity | 0.502017879414539 | bayes_pls_golite062009 |
| DNA binding | 0.393909838101373 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.30461161014793 | bayes_pls_golite062009 |
|
Region A: Residues: [362-595] |
1 11 21 31 41 51
| | | | | |
1 SNLDLSMYTR RGKKTISNTI LTLMIIFWAF PVAVVGCISN VNYLIEKVHF LKFIDHMPPK 60
61 LLGIITGILP SVALSILMSL VPPFIKFLGK FGGALTVQEI ENYCQNWYYA FQVVQVFLVT 120
121 TMTSAATSAV VQVIKEPASS MTLLASNLPK ASNFYISYFL LQGLSIPGGA LLQIVTLLLS 180
181 KVLGRIFDNT PRKKWNRWNQ LSAPSWGTVY PVYSLLVTIM ICYSIIAPII IGFA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [596-676] |
1 11 21 31 41 51
| | | | | |
1 AVAFVLIYFA YSYNLIYVLG HNADAKGRNY PRALFQVFVG LYLAEVCLIG LFVLAKNWGA 60
61 TVLEAVFLGF TVACHLYFKY K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [677-871] |
1 11 21 31 41 51
| | | | | |
1 FLPLMDAVPI SAIESVSERP EIKYPMDLGT SEMKNVGRAY PEILEKLSSS SGSDEFLETS 60
61 SRTSENTKEK IDKDDEGFAI TNISSVHKMP SFVLSYFSDL AASNRILTGF DRVLQLLPSF 120
121 YDIPVRVRNV QYVSPALKAT PPSVWIPKDP LGLSTYAIED ARGKVDIFDD NTTFNEKGNL 180
181 QYTGPPPDYD EAIRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
