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Protein Overview: SCD1_SCHPO

General Information:
Name(s) found: SCD1_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19115133|ref|NP_594221.1| hypothetical protein SPAC16E8.09 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Rho guanine nucleotide exchange factor scd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scd1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 872 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYFQDRKTS SRSLPSYINH STQNLVGPRK DETNLSEYMK LRLLQSPSQV IYNLENTVSL  60
   61 YRRCLNLRKR LMDISELAAF FDSIHREALN SSFKILEFKD IEFDDPVTEI WLFCRLGYPL 120
  121 CALFNCLPVK QKLEVNSSVS LENTNVCKAS LYRFMLMCKN ELGLTDAALF SISEIYKPST 180
  181 APLVRALQTI ELLLKKYEVS NTTKSSSTPS PSTDDNVPTG TLNSLIASGR RVTAELYETE 240
  241 LKYIQDLEYL SNYMVILQQK QILSQDTILS IFTNLNEILD FQRRFLVGLE MNLSLPVEEQ 300
  301 RLGALFIALE EGFSVYQVFC TNFPNAQQLI IDNQNQLLKV ANLLEPSYEL PALLIKPIQR 360
  361 ICKYPLLLNQ LLKGTPSGYQ YEEELKQGMA CVVRVANQVN ETRRIHENRN AIIELEQRVI 420
  421 DWKGYSLQYF GQLLVWDVVN VCKADIEREY HVYLFEKILL CCKEMSTLKR QARSISMNKK 480
  481 TKRLDSLQLK GRILTSNITT VVPNHHMGSY AIQIFWRGDP QHESFILKLR NEESHKLWMS 540
  541 VLNRLLWKNE HGSPKDIRSA ASTPANPVYN RSSSQTSKGY NSSDYDLLRT HSLDENVNSP 600
  601 TSISSPSSKS SPFTKTTSKD TKSATTTDER PSDFIRLNSE ESVGTSSLRT SQTTSTIVSN 660
  661 DSSSTASIPS QISRISQVNS LLNDYNYNRQ SHITRVYSGT DDGSSVSIFE DTSSSTKQKI 720
  721 FDQPTTNDCD VMRPRQYSYS AGMKSDGSLL PSTKHTSLSS SSTSTSLSVR NTTNVKIRLR 780
  781 LHEVSLVLVV AHDITFDELL AKVEHKIKLC GILKQAVPFR VRLKYVDEDG DFITITSDED 840
  841 VLMAFETCTF ELMDPVHNKG MDTVSLHVVV YF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 13.30103 No description for 2d86A was found.
    2 View Details [128..594] PSI-BLAST 85.39794 No description for 2pz1A was found.
    3 View Details [595..767] MSA 1.533996 View MSA. No confident structure predictions are available.
    4 View Details [768..872] FFAS03 2.58 Solution Structure of the PB1 Domain of Cdc24p (Long Form)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.21864685713998 bayes_pls_golite062009
  • Rho guanyl-nucleotide exchange factor activity
    		•  1.03402678056727 bayes_pls_golite062009
  • protein binding
    		•  0.989073783870014 bayes_pls_golite062009
  • signal transducer activity
    		•  0.635646176656368 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.635646176656368 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.416736165411261 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.416404907234896 bayes_pls_golite062009
  • phospholipase binding
    		•  0.386109322229891 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  0.328454638295227 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.199913902916545 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.122901168586355 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle