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Protein Overview: MSGN1_MOUSE

General Information:
Name(s) found: MSGN1_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|9506905|ref|NP_062417.1| mesogenin 1 [Mus musculus] [NCBI NR]
  • gi|81906698|sp|Q9JK54.1|MSGN1_MOUSE RecName: Full=Mesogenin-1; AltName: Full=Paraxial mesoderm-specific expression and regulatory capacities; AltName: Full=pMesogenin1; Short=pMsgn1 [NCBI NR]
  • gi|7839656|gb|AAF70375.1|AF261105_1 pMesogenin1 [Mus musculus] [NCBI NR]
  • gi|148666015|gb|EDK98431.1| mesogenin 1 [Mus musculus] [NCBI NR]
  • gi|109734243|gb|AAI16997.1| Mesogenin 1 [Mus musculus] [NCBI NR]
  • Mesogenin-1 OS=Mus musculus GN=Msgn1 PE=2 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):12-11339586 PMesogenin1 [hmr_yeast5_DM3-1_pombe.fasta]
  • mesogenin 1; pMesogenin1 [HMR_022704-rand.fasta]
  • PMesogenin1 [ipi.MOUSE.v3.06.fasta]
  • mesogenin 1 [Mus musculus]gi|7839656|gb|AAF70375.1| pMesogenin1 [Mus musculus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 PMesogenin1 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_019544) pMesogenin1; mesogenin [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • mesogenin 1 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Mesogenin-1 (Paraxial mesoderm-specific expression and regulatory capacities) (pMesogenin1) (pMsgn1) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Mesogenin 1 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • pMesogenin1 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 PMESOGENIN1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Msgn1 Mesogenin-1 [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Msgn1 PMesogenin1 [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=Msgn1 PMesogenin1 ENSMUSG00000047002 IPI00122298 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • mesogenin-1 [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00122298.1|SWISS-PROT:Q9JK54|ENSEMBL:ENSMUSP00000055001|REFSEQ:NP_062417 Tax_Id=10090 Gene_Symbol=Msgn1 Mesogenin-1 [ipi.MOUSE.fasta.20090209]
  • Mesogenin-1 OS=Mus musculus GN=Msgn1 [011711_HMR.fasta]
  • sp|Q9JK54|MSGN1_MOUSE Mesogenin-1 OS=Mus musculus GN=Msgn1 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
    • Organism: Mus musculus
    Length: 188 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: transcription [IEA]
    somitogenesis [IMP]
    multicellular organismal development [IEA]
    cell differentiation [IEA]
    regulation of transcription [IEA]
    segment specification [IMP]
    Molecular Function: DNA binding [IEA]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLGETFLS LEDGLDSSDT AGLLASWDWK SRARPLELVQ ESPTQSLSPA PSLESYSEVA  60
   61 LPCGHSGAST GGSDGYGSHE AAGLVELDYS MLAFQPPYLH TAGGLKGQKG SKVKMSVQRR 120
  121 RKASEREKLR MRTLADALHT LRNYLPPVYS QRGQPLTKIQ TLKYTIKYIG ELTDLLNSSG 180
  181 REPRPQSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] MSA 2.494996 View MSA. No confident structure predictions are available.
    2 View Details [104..188] PSI-BLAST 13.0 Myod B/HLH domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.04189889011459 bayes_pls_golite062009
  • DNA binding
    		•  1.34047429825414 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.24166705689751 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21289741269658 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.12120276328559 bayes_pls_golite062009
  • protein binding
    		•  0.90375176425983 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle