| Protein: | MSGN1_MOUSE |
| Organism: | Mus musculus |
| Length: | 188 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSGN1_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
126.0 | [0..1] | [188..1] |
|
|
111.0 | [0..1] | [186..1] |
|
|
110.0 | [0..1] | [186..1] |
|
|
109.0 | [0..1] | [186..1] |
|
|
109.0 | [0..1] | [187..1] |
|
|
105.0 | [0..45] | [182..10] |
|
|
104.0 | [0..1] | [186..86] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MDNLGETFLS LEDGLDSSDT AGLLASWDWK SRARPLELVQ ESPTQSLSPA PSLESYSEVA 60
61 LPCGHSGAST GGSDGYGSHE AAGLVELDYS MLAFQPPYLH TAG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-188] |
1 11 21 31 41 51
| | | | | |
1 GLKGQKGSKV KMSVQRRRKA SEREKLRMRT LADALHTLRN YLPPVYSQRG QPLTKIQTLK 60
61 YTIKYIGELT DLLNSSGREP RPQSV
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04189889011459 | bayes_pls_golite062009 |
| DNA binding | 1.34047429825414 | bayes_pls_golite062009 |
| transcription regulator activity | 1.24166705689751 | bayes_pls_golite062009 |
| transcription factor activity | 1.21289741269658 | bayes_pls_golite062009 |
| nucleic acid binding | 1.12120276328559 | bayes_pls_golite062009 |
| protein binding | 0.90375176425983 | bayes_pls_golite062009 |
