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Protein Overview: gi|108862573

General Information:
Name(s) found: gi|108862573 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108862573|gb|ABA97909.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1613 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWHRAGVLL LGAQSCLLVP GVPAVGGVGS VLFSMARMGW KLCHVFRPYT VVMAGSINRR  60
   61 GLDLTGFVLK LRSMCAVLGY PHGVDYQGKT SLAVTAGGDS FSAACQNAAL LAIGTLHQRY 120
  121 PDELQHLPYR YHPRRGGARD YATFRDASSE DDATIMHLAR MLKKDLDAVE AQRCQVKISQ 180
  181 GEMVTTRRSA NTGDGNQPEG SNHNNHGSPP PPPPPPPPLP PDTNAILTQI LAQQANMMAA 240
  241 FLHHIQNPPQ HNAPPLPPQH SKLAEFLRIC PPTFSSSNNP VDALDWLHAV GKKLDTVKCN 300
  301 DEEKVIFAAH QLQGPTSLWW DHFQATQSEG QHITWARFTA AFRRTHVPAG VMALKKREFQ 360
  361 ELKQGNRSVM EYLHEFNNLA RYAPEDVRED EKKQEKFLAG MDPELSVRLV SRDYPDFQRL 420
  421 VDKSIRLEAK HKELESHKRR LANFRNQQGA NQRPCSLDKA TETFKVSSVC ASTAFEPGHF 480
  481 ADKCPKPRRQ QGQAPPRPNN GGKDVIRGRV NHVTAENMLT TPDVIVGTFL IHSIPATILF 540
  541 DSGASHSFIY VPFVGRNRLG VERLRNPLLI TTPGGVMTAK YYSPAVPIEI QGIPFPSDLI 600
  601 LLDTKNLDVI LGINWLAQFQ GVVDCARRTV TLYRGPEQPV VFFAPPTSVG SSELHQIGLS 660
  661 EIPIVREFGD VFPEELPGMP PKREIEFRID LAPGTTPLYK RPYRMAANEL AEVKKQLEEL 720
  721 KEKGYIRPST SPWGAPVIFV EKKDKTKRMC VDYRALNEVT IKNKYPLPRI DDLFDQLKGA 780
  781 TVFSKIDLRS GYHQLRIREE DIPKTAFTTR YGLYEFTVMS FGLTNAPAFF MNLMNKVFME 840
  841 YLDKFVVVFI DDILVYSQLE EDHQQHLRLV LGKLREHQLY AKLSKCEFWL SKVKFLGHVI 900
  901 SAKGVAVDPE TVTAVTDWKQ PKTVTQIRSV LGLAGYYRRF IENFSKIARP MAQLLKKEEK 960
  961 FVWSPQCEKA FQTLKEKLVS SPVLILPDTR KDFMVYCDAS RQGLGCVLMQ EGHVVAYASR1020
 1021 QLRPHEGNYP THDLELAAVV HALKIWRHYL IGNRCEIYTD HKSLKYIFTQ SDLNLRQRRW1080
 1081 LELIKDYDVG IHYHPGKANV VANALSRKSH CNTLGVRGIP PELNQQMEAL NLSIVSRGFL1140
 1141 ATLEAKPTLL DQIREAQKND PDVRGLLKNM KQGKAAGFTE DEHGTLWNGN RVCVPDDREL1200
 1201 KQLILQEAHE SPYSIHPGST KMYLDLKEKY WWVSMKREIA EFVALCDVCQ RVKAEYQRPA1260
 1261 GLLQPLQVPE WKWGEIGMDF ITGLPKTQGG YDSIWVVVDR LTKVARFIPV KTTYGGNKLA1320
 1321 ELYFARIVSL HGVPKKIVSD RGSQFTSHFW KKLQEELGTR LNFSTAYHPQ TDGQTERLNQ1380
 1381 ILEDMLRACV LDFGKTGDKS LPYAEFSYNN SYQASIQMAP YEALYGRKCR TPLLWDQVGE1440
 1441 SQVFGTDILR EAKAKVRTIR DNLKVAQSWQ KSYADNRRRN LEFAVDDFVY LRVTPLRGVH1500
 1501 RFQTKGKLAP RFVGPFRIIA RRGEVAYQLE LPASLGNVHD VFHVSQLKKC LRVPSEQADS1560
 1561 EQIEVREDLT YVERPVKILD TMERRIRNRV IRFCKVQWSN YAEEEATTLR KTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] deduced N/A No confident structure predictions are available.
    2 View Details [152..366] PSI-BLAST 32.0 HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein
    3 View Details [367..436] PSI-BLAST 20.69897 No description for 3dikA was found.
    4 View Details [437..514] PSI-BLAST 4.30103 HIV nucleocapsid
    5 View Details [515..683] PSI-BLAST 24.69897 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    6 View Details [684..1189] PSI-BLAST 138.0 No description for 3di6A was found.
    7 View Details [1190..1510] PSI-BLAST 62.69897 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    8 View Details [1511..1613] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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