| Protein: | gi|108862573 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1613 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|108862573.
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MTWHRAGVLL LGAQSCLLVP GVPAVGGVGS VLFSMARMGW KLCHVFRPYT VVMAGSINRR 60
61 GLDLTGFVLK LRSMCAVLGY PHGVDYQGKT SLAVTAGGDS FSAACQNAAL LAIGTLHQRY 120
121 PDELQHLPYR YHPRRGGARD YATFRDASSE D
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [152-366] |
1 11 21 31 41 51
| | | | | |
1 DATIMHLARM LKKDLDAVEA QRCQVKISQG EMVTTRRSAN TGDGNQPEGS NHNNHGSPPP 60
61 PPPPPPPLPP DTNAILTQIL AQQANMMAAF LHHIQNPPQH NAPPLPPQHS KLAEFLRICP 120
121 PTFSSSNNPV DALDWLHAVG KKLDTVKCND EEKVIFAAHQ LQGPTSLWWD HFQATQSEGQ 180
181 HITWARFTAA FRRTHVPAGV MALKKREFQE LKQGN
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 1l6nA |
| Description: | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [367-436] |
1 11 21 31 41 51
| | | | | |
1 RSVMEYLHEF NNLARYAPED VREDEKKQEK FLAGMDPELS VRLVSRDYPD FQRLVDKSIR 60
61 LEAKHKELES
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [437-514] |
1 11 21 31 41 51
| | | | | |
1 HKRRLANFRN QQGANQRPCS LDKATETFKV SSVCASTAFE PGHFADKCPK PRRQQGQAPP 60
61 RPNNGGKDVI RGRVNHVT
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [515-683] |
1 11 21 31 41 51
| | | | | |
1 AENMLTTPDV IVGTFLIHSI PATILFDSGA SHSFIYVPFV GRNRLGVERL RNPLLITTPG 60
61 GVMTAKYYSP AVPIEIQGIP FPSDLILLDT KNLDVILGIN WLAQFQGVVD CARRTVTLYR 120
121 GPEQPVVFFA PPTSVGSSEL HQIGLSEIPI VREFGDVFPE ELPGMPPKR
|
| Detection Method: | |
| Confidence: | 24.69897 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [684-1189] |
1 11 21 31 41 51
| | | | | |
1 EIEFRIDLAP GTTPLYKRPY RMAANELAEV KKQLEELKEK GYIRPSTSPW GAPVIFVEKK 60
61 DKTKRMCVDY RALNEVTIKN KYPLPRIDDL FDQLKGATVF SKIDLRSGYH QLRIREEDIP 120
121 KTAFTTRYGL YEFTVMSFGL TNAPAFFMNL MNKVFMEYLD KFVVVFIDDI LVYSQLEEDH 180
181 QQHLRLVLGK LREHQLYAKL SKCEFWLSKV KFLGHVISAK GVAVDPETVT AVTDWKQPKT 240
241 VTQIRSVLGL AGYYRRFIEN FSKIARPMAQ LLKKEEKFVW SPQCEKAFQT LKEKLVSSPV 300
301 LILPDTRKDF MVYCDASRQG LGCVLMQEGH VVAYASRQLR PHEGNYPTHD LELAAVVHAL 360
361 KIWRHYLIGN RCEIYTDHKS LKYIFTQSDL NLRQRRWLEL IKDYDVGIHY HPGKANVVAN 420
421 ALSRKSHCNT LGVRGIPPEL NQQMEALNLS IVSRGFLATL EAKPTLLDQI REAQKNDPDV 480
481 RGLLKNMKQG KAAGFTEDEH GTLWNG
|
| Detection Method: | |
| Confidence: | 138.0 |
| Match: | 3di6A |
| Description: | No description for 3di6A was found. |
|
Region A: Residues: [1190-1510] |
1 11 21 31 41 51
| | | | | |
1 NRVCVPDDRE LKQLILQEAH ESPYSIHPGS TKMYLDLKEK YWWVSMKREI AEFVALCDVC 60
61 QRVKAEYQRP AGLLQPLQVP EWKWGEIGMD FITGLPKTQG GYDSIWVVVD RLTKVARFIP 120
121 VKTTYGGNKL AELYFARIVS LHGVPKKIVS DRGSQFTSHF WKKLQEELGT RLNFSTAYHP 180
181 QTDGQTERLN QILEDMLRAC VLDFGKTGDK SLPYAEFSYN NSYQASIQMA PYEALYGRKC 240
241 RTPLLWDQVG ESQVFGTDIL REAKAKVRTI RDNLKVAQSW QKSYADNRRR NLEFAVDDFV 300
301 YLRVTPLRGV HRFQTKGKLA P
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1511-1613] |
1 11 21 31 41 51
| | | | | |
1 RFVGPFRIIA RRGEVAYQLE LPASLGNVHD VFHVSQLKKC LRVPSEQADS EQIEVREDLT 60
61 YVERPVKILD TMERRIRNRV IRFCKVQWSN YAEEEATTLR KTR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
