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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|108862573
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWHRAGVLL LGAQSCLLVP GVPAVGGVGS VLFSMARMGW KLCHVFRPYT VVMAGSINRR  60
   61 GLDLTGFVLK LRSMCAVLGY PHGVDYQGKT SLAVTAGGDS FSAACQNAAL LAIGTLHQRY 120
  121 PDELQHLPYR YHPRRGGARD YATFRDASSE DDATIMHLAR MLKKDLDAVE AQRCQVKISQ 180
  181 GEMVTTRRSA NTGDGNQPEG SNHNNHGSPP PPPPPPPPLP PDTNAILTQI LAQQANMMAA 240
  241 FLHHIQNPPQ HNAPPLPPQH SKLAEFLRIC PPTFSSSNNP VDALDWLHAV GKKLDTVKCN 300
  301 DEEKVIFAAH QLQGPTSLWW DHFQATQSEG QHITWARFTA AFRRTHVPAG VMALKKREFQ 360
  361 ELKQGNRSVM EYLHEFNNLA RYAPEDVRED EKKQEKFLAG MDPELSVRLV SRDYPDFQRL 420
  421 VDKSIRLEAK HKELESHKRR LANFRNQQGA NQRPCSLDKA TETFKVSSVC ASTAFEPGHF 480
  481 ADKCPKPRRQ QGQAPPRPNN GGKDVIRGRV NHVTAENMLT TPDVIVGTFL IHSIPATILF 540
  541 DSGASHSFIY VPFVGRNRLG VERLRNPLLI TTPGGVMTAK YYSPAVPIEI QGIPFPSDLI 600
  601 LLDTKNLDVI LGINWLAQFQ GVVDCARRTV TLYRGPEQPV VFFAPPTSVG SSELHQIGLS 660
  661 EIPIVREFGD VFPEELPGMP PKREIEFRID LAPGTTPLYK RPYRMAANEL AEVKKQLEEL 720
  721 KEKGYIRPST SPWGAPVIFV EKKDKTKRMC VDYRALNEVT IKNKYPLPRI DDLFDQLKGA 780
  781 TVFSKIDLRS GYHQLRIREE DIPKTAFTTR YGLYEFTVMS FGLTNAPAFF MNLMNKVFME 840
  841 YLDKFVVVFI DDILVYSQLE EDHQQHLRLV LGKLREHQLY AKLSKCEFWL SKVKFLGHVI 900
  901 SAKGVAVDPE TVTAVTDWKQ PKTVTQIRSV LGLAGYYRRF IENFSKIARP MAQLLKKEEK 960
  961 FVWSPQCEKA FQTLKEKLVS SPVLILPDTR KDFMVYCDAS RQGLGCVLMQ EGHVVAYASR1020
 1021 QLRPHEGNYP THDLELAAVV HALKIWRHYL IGNRCEIYTD HKSLKYIFTQ SDLNLRQRRW1080
 1081 LELIKDYDVG IHYHPGKANV VANALSRKSH CNTLGVRGIP PELNQQMEAL NLSIVSRGFL1140
 1141 ATLEAKPTLL DQIREAQKND PDVRGLLKNM KQGKAAGFTE DEHGTLWNGN RVCVPDDREL1200
 1201 KQLILQEAHE SPYSIHPGST KMYLDLKEKY WWVSMKREIA EFVALCDVCQ RVKAEYQRPA1260
 1261 GLLQPLQVPE WKWGEIGMDF ITGLPKTQGG YDSIWVVVDR LTKVARFIPV KTTYGGNKLA1320
 1321 ELYFARIVSL HGVPKKIVSD RGSQFTSHFW KKLQEELGTR LNFSTAYHPQ TDGQTERLNQ1380
 1381 ILEDMLRACV LDFGKTGDKS LPYAEFSYNN SYQASIQMAP YEALYGRKCR TPLLWDQVGE1440
 1441 SQVFGTDILR EAKAKVRTIR DNLKVAQSWQ KSYADNRRRN LEFAVDDFVY LRVTPLRGVH1500
 1501 RFQTKGKLAP RFVGPFRIIA RRGEVAYQLE LPASLGNVHD VFHVSQLKKC LRVPSEQADS1560
 1561 EQIEVREDLT YVERPVKILD TMERRIRNRV IRFCKVQWSN YAEEEATTLR KTR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle