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Protein Overview: gi|108707484, gi...

General Information:
Name(s) found: gi|222624667 [NCBI NR]
gi|115452247 [NCBI NR]
gi|113548195 [NCBI NR]
gi|108707484 [NCBI NR]
gi|108707483 [NCBI NR]
gi|108707482 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|222624667|gb|EEE58799.1| hypothetical protein OsJ_10344 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115452247|ref|NP_001049724.1| Os03g0278200 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113548195|dbj|BAF11638.1| Os03g0278200 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108707484|gb|ABF95279.1| rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|108707483|gb|ABF95278.1| rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|108707482|gb|ABF95277.1| rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 675 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAYEPKNIL ITGAAGFIAS HVANRLVRNY PHYKIVVLDK LDYCSSLSNL NPSRPSPNFK  60
   61 FVKGDIASAD LVNYLLTTES IDTIMHFAAQ THVDNSFGNS FEFTKNNIYG THVLLEACKV 120
  121 TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP 180
  181 VITTRGNNVY GPNQFPEKLI PKFILLAMRG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH 240
  241 KGEVGHVYNI GTVKERRVID VAKDICKLFG LDTEKVIRFV ENRPFNDQRY FLDDQKLKKL 300
  301 GWAERTLWEE GLKKTIEWYT NNPDYWGDVA GALLPHPRML MTPGVERHNW TDEIKSLSTS 360
  361 PDEAKESSTA VPAATAKSTS SAPQKASYKF LIYGRTGWIG GLLGKICEKQ GIPYEYGKGR 420
  421 LEERSQLLQD IRNVKPTHVF NAAGVTGRPN VDWCETHKQD TIRTNVVGTL NLADVCREQG 480
  481 LLMINYATGC IFEYDAKHPE GSGIGFKEED KPNFTGSYYS KTKAMVEELL QEYDNVCTLR 540
  541 VRMPISSDLS NPRNFITKIA RYDKVVNIPN SMTILDELLP ISIEMAKRDC RGIWNFTNPG 600
  601 VVSHNEILEM YKKYLNPDFK WTNFTLEEQA KVIVAPRSNN EMDASKLKSE FPELLSIKDS 660
  661 LVKYVFEPNR KVPAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..369] PSI-BLAST 97.69897 dTDP-glucose 4,6-dehydratase (RmlB)
    2 View Details [370..675] PSI-BLAST 44.69897 gdp-mannose-3', 5' -epimerase (arabidopsis thaliana), with gdp-alpha-d-mannose and gdp-beta-l-galactose bound in the active site.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • steroid dehydrogenase activity
    		•  1.75109362865449 bayes_pls_golite062009
  • steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.55012034958204 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • binding
    		•  0.784517759335365 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009
    2
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • steroid dehydrogenase activity
    		•  1.75109362865449 bayes_pls_golite062009
  • steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.55012034958204 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • binding
    		•  0.784517759335365 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle