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Protein Overview: gi|108707446

General Information:
Name(s) found: gi|108707446 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108707446|gb|ABF95241.1| initiator-binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 692 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFQKRSSLE MESGGGSHVA EMPRVPKSAR GKRSIRKKES QGQVMCAFDL LATVAGKLLD  60
   61 EGEGSLGNAS SGTPAVDASP KDVRVKQEQC DEEAKHFKNE VMDQDSCNES ALVSHIAFQR 120
  121 PVNHHGRKGE DPEGSHAVIE DPKAKSEALD KESSMISCTK AELGCNFAAI ADRWSPESVE 180
  181 SGAFTGDAAA IAMPATTSGF HKNAPDMYNL LDPMDVDVKP PPLVSSDSTG EMPLYGNKIR 240
  241 RSTSFPRVPK GGAGFTVDRD EDDDDKSSGC THPSTATNRG FRPNCTAGHS RVKKLLACKH 300
  301 RKVAPARMHK GDLSYSDVDR KPSFRNKKMY YTRQRTQRST FKRRKMFDRH SAQVSEEYAK 360
  361 ANTKFAARDS HAVSLEANKG TNSTAFQKSQ ESSDCHVKLR IKSFKVPELL IEIPETATVG 420
  421 SLKKTVLEAV NAILGGGLRV GVLHHGKKVR DDNKTLMQAG ISHDEVLDNL GFSLEPNCAP 480
  481 HPSQLSPPED NEFMETVDTT EPLARIAPAD SSSKHGEVDA SQELALAPLS ANYQGSDHDF 540
  541 VHSPGGMSSP DKASTNSRAI VPVTPADSNA GAIVPANKAK RSPEQGQRRI RRPFSVAEVE 600
  601 ALVLAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQEL 660
  661 LDRVLAAQAY WSQQQAKLQP KTPPLAEALL LT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] deduced N/A No confident structure predictions are available.
    2 View Details [239..363] deduced N/A No confident structure predictions are available.
    3 View Details [364..476] FFAS03 1.04 Ubiquitin-like N-terminal domain of PLIC-2
    4 View Details [477..583] deduced N/A No confident structure predictions are available.
    5 View Details [584..692] PSI-BLAST 9.69897 No description for 2ajeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.0155013961187369 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle