Protein Overview: gi|109504676, gi...

General Information:
Name(s) found:	gi\|157822249 [NCBI NR] gi\|149044971 [NCBI NR] gi\|109505487 [NCBI NR] gi\|109504676 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|157822249\|ref\|NP_001101876.1\| serine palmitoyltransferase subunit 1 [Rattus norvegicus] [NCBI NR] gi\|149044971\|gb\|EDL98057.1\| serine palmitoyltransferase, long chain base subunit 1 (predicted), isoform CRA_a [Rattus norvegicus] [NCBI NR] gi\|109505487\|ref\|XP_001053124.1\| PREDICTED: similar to Serine palmitoyltransferase 1 (Long chain base biosynthesis protein 1) (LCB 1) (Serine-palmitoyl-CoA transferase 1) (SPT 1) (SPT1) [Rattus norvegicus] [NCBI NR] gi\|109504676\|ref\|XP_341496.3\| PREDICTED: similar to Serine palmitoyltransferase 1 (Long chain base biosynthesis protein 1) (LCB 1) (Serine-palmitoyl-CoA transferase 1) (SPT 1) (SPT1) [Rattus norvegicus] [NCBI NR] Tax_Id=10116 PREDICTED: similar to Serine palmitoyltransferase 1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] Tax_Id=10116 Similar to Serine palmitoyltranSferaSe 1 (Long chain baSe bioSyntheSiS protein 1) (LCB 1) (Serine-palmitoyl-CoA tranSferaSe 1) (SPT 1) (SPT1) [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta] serine palmitoyltransferase, long chain base subunit 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] serine palmitoyltransferase, long chain base subunit 1 (predicted), isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 SIMILAR TO SERINE PALMITOYLTRANSFERASE 1 (LONG CHAIN BASE BIOSYNTHESIS PROTEIN 1) (LCB 1) (SERINE-PALMITOYL-COA TRANSFERASE 1) (SPT 1) (SPT1) [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] serine palmitoyltransferase subunit 1 [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta] PREDICTED: similar to Serine palmitoyltransferase 1 (Long chain base biosynthesis protein 1) (LCB 1) (Serine-palmitoyl-CoA transferase 1) (SPT 1) (SPT1) [Rattus norvegicus] [nr-271106-contam.fasta] Tax_Id=10116 Gene_Symbol=Sptlc1 serine palmitoyltransferase subunit 1 [rat-ipi-250309-contam.fasta] Serine palmitoyltransferase, long chain base subunit 1 (Predicted), isoform CRA_a OS=Rattus norvegicus GN=Sptlc1 [011711_HMR.fasta] Serine palmitoyltransferase, long chain base subunit 1 (Predicted), isoform CRA_a OS=Rattus norvegicus GN=Sptlc1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta] Protein Sptlc1 OS=Rattus norvegicus GN=Sptlc1 PE=4 SV=1 [Aridor_1205.fasta] Protein Sptlc1 OS=Rattus norvegicus GN=Sptlc1 PE=1 SV=1 [RAT.fasta.20160308]
Organism:	Rattus norvegicus
Length:	473 amino acids
Gene Ontology:
Cellular Component:	SPOTS complex [UNKNOWN] serine C-palmitoyltransferase complex [UNKNOWN]
Biological Process:	sphingosine biosynthetic process [UNKNOWN] ceramide biosynthetic process [UNKNOWN] biosynthetic process [IEA] sphinganine biosynthetic process [UNKNOWN] sphingomyelin biosynthetic process [UNKNOWN]
Molecular Function:	pyridoxal phosphate binding [IEA] protein binding [UNKNOWN] transferase activity, transferring nitrogenous groups [IEA] serine C-palmitoyltransferase activity [UNKNOWN]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVAEQWVL VEMVQALYEA PAYHLILEGI LILWIIRLVF SKTYKLQERS DLTAKEKEEL  60
   61 IEEWQPEPLV PPVSRNHPAL NYNIVSGPPT HNIVVNGKEC VNFASFNFLG LLANPRVKAA 120
  121 AFASLKKYGV GTCGPRGFYG TFDVHLDLEE RLAKFMKTEE AIIYSYGFST IASAIPAYSK 180
  181 RGDIVFVDSA ACFAIQKGLQ ASRSDIKLFK HNDVADLERL LKEQEIEDQK NPRKARVTRR 240
  241 FIVAEGLYMN TGTICPLPEL VRLKYKYKAR IFLEESLSFG VLGEHGRGVT EHYGISIDDI 300
  301 DLISANMENA LASVGGFCCG RSFVVDHQRL SGQGYCFSAS LPPLLAAAAI EALNIMEENP 360
  361 GIFAVLKKKC QTIHKSLQGV SGLKVVGESL CPALHLQLEE STGSRERDMK LLQEIVEQCM 420
  421 NKGIALTQAR YLDKEEKCLP PPSIRVVVTV EQTDEELQRA AATIREAAQA VLL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.29

Protein Overview: gi|109504676, gi...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: