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Protein Overview: gi|115477737, gi...

General Information:
Name(s) found: gi|115477737 [NCBI NR]
gi|113624433 [NCBI NR]
Description(s) found:
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  • gi|115477737|ref|NP_001062464.1| Os08g0554100 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113624433|dbj|BAF24378.1| Os08g0554100 [Oryza sativa Japonica Group] [NCBI NR]
  • Os08g0554100 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 658 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLSCKNLL PCCMGHPPAT SPAGATAGVS VKVSDRYVEI KNGIFELTLS NPDGIVTGVR  60
   61 YNGVDNLMEI LNKEDNRGYW DLVWSKLGER TGIFDVIKGT EFRIIYQDEN HAEVSFVRTW 120
  121 DPSLEGKAVP LNIDKRFIVL RGCSGFYTYG IYEHQEGWPG FSLGETRVAF KLRKDKFHYM 180
  181 ALADDRQRIM PMPEDRVPPR GQQLAYPEAV LLVDPINPDL RGEVDDKYQY SCEDQYNNVH 240
  241 GWISFDPPIG FWQITPSDEF RTGGPVKQNL TSHVGPTMLA MFLSGHYAGD DLTPKFLTGE 300
  301 YWKKVHGPVF MYLNSSWDGS DPTLLWEDAK VQMMIEKESW PYCFALSDDF QKTEQRGCIS 360
  361 GRLLVRDRYL DDADLYATSA YVGLALPGDV GSWQRECKGY QFWCRAEDDG SFCIRNIVAG 420
  421 DYNLYAWVPG FIGDYKLDAK LTISSGDDIY LGDLVYEPPR DGPTMWEIGI PDRSASEFFV 480
  481 PDPNPNYVNR LYINHPDRFR QYGLWERYAE LYPDGDLVYT IGQSDYTTDW FFAQVNRRTD 540
  541 QSTYQPTTWQ IKFNLDSVSP NSTYKFRVAL ASSANAELQV RFNDQDRTAP HFTTGLIGKD 600
  601 NTIARHGIHG LYWLFNIDVS GAWLVQGMNT IYLKQPRNQS PFQGLMYDYL RMEGPSGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..658] PSI-BLAST 133.0 Rhamnogalacturonan lyase from Aspergillus aculeatus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.24087518312023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle