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View Structure Prediction Details

Protein: gi|115477737, gi...
Organism: Oryza sativa Japonica Group
Length: 658 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115477737, gi....

Description E-value Query
Range
Subject
Range
gi|50948369, gi|... - gi|50948369|ref|XP_483712.1| putative MYST1 [Oryza sativa (japonica cultivar-group)], gi|50725541|db...
924.0 [0..14] [658..1]

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Predicted Domain #1
Region A:
Residues: [1-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLSCKNLL PCCMGHPPAT SPAGATAGVS VKVSDRYVEI KNGIFELTLS NPDGIVTGVR  60
   61 YNGVDNLMEI LNKEDNRGYW DLVWSKLGER TGIFDVIKGT EFRIIYQDEN HAEVSFVRTW 120
  121 DPSLEGKAVP LNIDKRFIVL RGCSGFYTYG IYEHQEGWPG FSLGETRVAF KLRKDKFHYM 180
  181 ALADDRQRIM PMPEDRVPPR GQQLAYPEAV LLVDPINPDL RGEVDDKYQY SCEDQYNNVH 240
  241 GWISFDPPIG FWQITPSDEF RTGGPVKQNL TSHVGPTMLA MFLSGHYAGD DLTPKFLTGE 300
  301 YWKKVHGPVF MYLNSSWDGS DPTLLWEDAK VQMMIEKESW PYCFALSDDF QKTEQRGCIS 360
  361 GRLLVRDRYL DDADLYATSA YVGLALPGDV GSWQRECKGY QFWCRAEDDG SFCIRNIVAG 420
  421 DYNLYAWVPG FIGDYKLDAK LTISSGDDIY LGDLVYEPPR DGPTMWEIGI PDRSASEFFV 480
  481 PDPNPNYVNR LYINHPDRFR QYGLWERYAE LYPDGDLVYT IGQSDYTTDW FFAQVNRRTD 540
  541 QSTYQPTTWQ IKFNLDSVSP NSTYKFRVAL ASSANAELQV RFNDQDRTAP HFTTGLIGKD 600
  601 NTIARHGIHG LYWLFNIDVS GAWLVQGMNT IYLKQPRNQS PFQGLMYDYL RMEGPSGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 133.0
Match: 1nkgA
Description: Rhamnogalacturonan lyase from Aspergillus aculeatus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.24087518312023 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle