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Protein Overview: gi|113631781, gi...

General Information:
Name(s) found: gi|222641844 [NCBI NR]
gi|215740574 [NCBI NR]
gi|115479909 [NCBI NR]
gi|113631781 [NCBI NR]
Description(s) found:
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  • gi|222641844|gb|EEE69976.1| hypothetical protein OsJ_29869 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215740574|dbj|BAG97230.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115479909|ref|NP_001063548.1| Os09g0493800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113631781|dbj|BAF25462.1| Os09g0493800 [Oryza sativa Japonica Group] [NCBI NR]
  • Os09g0493800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 395 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRETGYYDV LGVSPTATEV EIKKAYYMKA RKVHPDKNPN DPLAAAKFQE LGEAYQVLSD  60
   61 PTQRQAYDSY GKSGISTEAI IDPAAIFAML FGSELFEDYI GQLAMASMAS LDIFGDEEEI 120
  121 DARMLQEKMR VVQKEREEKL AETLKNKLHL YVQGNKEEFV QFAEAEVSRL SNAAYGVDML 180
  181 STIGYVYSRQ AAKELGKKAI YLGVPFIAEW FRNKGHYIKS QVTAATGAIA LMQLQEDLKK 240
  241 HLSAECHYTE EELEAYMETH KSVMVDSLWK LNVADIEGTL SHVCQMVLQD STIRREELRA 300
  301 RAKGLKTLGK IFQRVKLGSS EGEVTTINNT INNSDDNDGS SPDSSPMSPR EHPYDPNPPY 360
  361 YQSPYVEAPQ FVGGYPSLNF PMPTAPPGAQ RDPIP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] PSI-BLAST 21.69897 NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
    2 View Details [122..395] PSI-BLAST 28.30103 The crystal structure of Hsp40 Ydj1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  3.04403163860617 bayes_pls_golite062009
  • heat shock protein binding
    		•  2.17994194200939 bayes_pls_golite062009
  • binding
    		•  2.03854863870179 bayes_pls_golite062009
  • chaperone binding
    		•  1.61155546076854 bayes_pls_golite062009
  • protein binding
    		•  0.912937133925792 bayes_pls_golite062009
  • Hsp70 protein binding
    		•  0.541755903922701 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.423488346839872 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.146399219759372 bayes_pls_golite062009
  • catalytic activity
    		•  0.106988907594358 bayes_pls_golite062009
  • DNA binding
    		•  0.10307408349439 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.13705208493215 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.04158808514315 bayes_pls_golite062009
  • protein binding
    		•  0.882827615657312 bayes_pls_golite062009
  • protein disulfide isomerase activity
    		•  0.290861970307477 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing S-S bonds
    		•  0.290861970307477 bayes_pls_golite062009
  • catalytic activity
    		•  0.276917867171685 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting keto- and enol-groups
    		•  0.0964866497718595 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle