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Protein Overview: gi|115460588, gi...

General Information:
Name(s) found: gi|115460588 [NCBI NR]
gi|113565465 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|115460588|ref|NP_001053894.1| Os04g0618700 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113565465|dbj|BAF15808.1| Os04g0618700 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1183 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNKFASKM SQHYTKTICI AVVLVAVLFS LSSAAAAGSG AAVSVQLEAL LEFKNGVADD  60
   61 PLGVLAGWRV GKSGDGAVRG GALPRHCNWT GVACDGAGQV TSIQLPESKL RGALSPFLGN 120
  121 ISTLQVIDLT SNAFAGGIPP QLGRLGELEQ LVVSSNYFAG GIPSSLCNCS AMWALALNVN 180
  181 NLTGAIPSCI GDLSNLEIFE AYLNNLDGEL PPSMAKLKGI MVVDLSCNQL SGSIPPEIGD 240
  241 LSNLQILQLY ENRFSGHIPR ELGRCKNLTL LNIFSNGFTG EIPGELGELT NLEVMRLYKN 300
  301 ALTSEIPRSL RRCVSLLNLD LSMNQLAGPI PPELGELPSL QRLSLHANRL AGTVPASLTN 360
  361 LVNLTILELS ENHLSGPLPA SIGSLRNLRR LIVQNNSLSG QIPASISNCT QLANASMSFN 420
  421 LFSGPLPAGL GRLQSLMFLS LGQNSLAGDI PDDLFDCGQL QKLDLSENSF TGGLSRLVGQ 480
  481 LGNLTVLQLQ GNALSGEIPE EIGNMTKLIS LKLGRNRFAG HVPASISNMS SLQLLDLGHN 540
  541 RLDGVFPAEV FELRQLTILG AGSNRFAGPI PDAVANLRSL SFLDLSSNML NGTVPAALGR 600
  601 LDQLLTLDLS HNRLAGAIPG AVIASMSNVQ MYLNLSNNAF TGAIPAEIGG LVMVQTIDLS 660
  661 NNQLSGGVPA TLAGCKNLYS LDLSGNSLTG ELPANLFPQL DLLTTLNISG NDLDGEIPAD 720
  721 IAALKHIQTL DVSRNAFAGA IPPALANLTA LRSLNLSSNT FEGPVPDGGV FRNLTMSSLQ 780
  781 GNAGLCGGKL LAPCHGHAAG KKRVFSRTGL VILVVLIALS TLLLLMVATI LLVSYRRYRR 840
  841 KRRAADIAGD SPEAAVVVPE LRRFSYGQLA AATNSFDQGN VIGSSNLSTV YKGVLAGDAD 900
  901 GGMVVAVKRL NLEQFPSKSD KCFLTELATL SRLRHKNLAR VVGYAWEAGK IKALVLDYMV 960
  961 NGDLDGAIHG GAAAPPPAPS RWTVRERLRV CVSVAHGLVY LHSGYDFPVV HCDVKPSNVL1020
 1021 LDGDWEARVS DFGTARMLGV HLPAAANAAA QSTATSSAFR GTVGYMAPEF AYMRTVSTKV1080
 1081 DVFSFGVLAM ELFTGRRPTG TIEEDGVPLT LQQLVDNAVS RGLDGVHAVL DPRMKVATEA1140
 1141 DLSTAADVLA VALSCAAFEP ADRPDMGAVL SSLLKMSKLV GED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..727] PSI-BLAST 72.154902 The molecular structure of toll-like receptor 3 ligand binding domain
    2 View Details [728..876] deduced N/A No confident structure predictions are available.
    3 View Details [877..1183] PSI-BLAST 50.69897 No description for 2qkwB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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