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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115460588, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNKFASKM SQHYTKTICI AVVLVAVLFS LSSAAAAGSG AAVSVQLEAL LEFKNGVADD  60
   61 PLGVLAGWRV GKSGDGAVRG GALPRHCNWT GVACDGAGQV TSIQLPESKL RGALSPFLGN 120
  121 ISTLQVIDLT SNAFAGGIPP QLGRLGELEQ LVVSSNYFAG GIPSSLCNCS AMWALALNVN 180
  181 NLTGAIPSCI GDLSNLEIFE AYLNNLDGEL PPSMAKLKGI MVVDLSCNQL SGSIPPEIGD 240
  241 LSNLQILQLY ENRFSGHIPR ELGRCKNLTL LNIFSNGFTG EIPGELGELT NLEVMRLYKN 300
  301 ALTSEIPRSL RRCVSLLNLD LSMNQLAGPI PPELGELPSL QRLSLHANRL AGTVPASLTN 360
  361 LVNLTILELS ENHLSGPLPA SIGSLRNLRR LIVQNNSLSG QIPASISNCT QLANASMSFN 420
  421 LFSGPLPAGL GRLQSLMFLS LGQNSLAGDI PDDLFDCGQL QKLDLSENSF TGGLSRLVGQ 480
  481 LGNLTVLQLQ GNALSGEIPE EIGNMTKLIS LKLGRNRFAG HVPASISNMS SLQLLDLGHN 540
  541 RLDGVFPAEV FELRQLTILG AGSNRFAGPI PDAVANLRSL SFLDLSSNML NGTVPAALGR 600
  601 LDQLLTLDLS HNRLAGAIPG AVIASMSNVQ MYLNLSNNAF TGAIPAEIGG LVMVQTIDLS 660
  661 NNQLSGGVPA TLAGCKNLYS LDLSGNSLTG ELPANLFPQL DLLTTLNISG NDLDGEIPAD 720
  721 IAALKHIQTL DVSRNAFAGA IPPALANLTA LRSLNLSSNT FEGPVPDGGV FRNLTMSSLQ 780
  781 GNAGLCGGKL LAPCHGHAAG KKRVFSRTGL VILVVLIALS TLLLLMVATI LLVSYRRYRR 840
  841 KRRAADIAGD SPEAAVVVPE LRRFSYGQLA AATNSFDQGN VIGSSNLSTV YKGVLAGDAD 900
  901 GGMVVAVKRL NLEQFPSKSD KCFLTELATL SRLRHKNLAR VVGYAWEAGK IKALVLDYMV 960
  961 NGDLDGAIHG GAAAPPPAPS RWTVRERLRV CVSVAHGLVY LHSGYDFPVV HCDVKPSNVL1020
 1021 LDGDWEARVS DFGTARMLGV HLPAAANAAA QSTATSSAFR GTVGYMAPEF AYMRTVSTKV1080
 1081 DVFSFGVLAM ELFTGRRPTG TIEEDGVPLT LQQLVDNAVS RGLDGVHAVL DPRMKVATEA1140
 1141 DLSTAADVLA VALSCAAFEP ADRPDMGAVL SSLLKMSKLV GED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle