YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CHR25_ARATH

General Information:
Name(s) found: CHR25_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana GN=CHR25 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 910 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA repair [ISS]
    double-strand break repair via homologous recombination [IMP]
    response to gamma radiation [IEP]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA][ISS]
    DNA binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL  60
   61 RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST GQLSRRLSAR KRFVPWGSST 120
  121 PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL 180
  181 RPHQREGVQF MFDCVSGLHG SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK 240
  241 KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY 300
  301 ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE 360
  361 FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK NLAADRSAEL SSKVNQFILR 420
  421 RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK 480
  481 KLCNHPKLIY DTIKSGNPGT VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS 540
  541 RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP 600
  601 TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL 660
  661 STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST EDLRDLFSFH GDVRSEIHEK 720
  721 MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL 780
  781 EEDLGSWGHH FTSKSVPDAI LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR 840
  841 NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL 900
  901 VSVNHDDDFV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 9.0 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    2 View Details [126..819] PSI-BLAST 104.0 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    3 View Details [820..910] PSI-BLAST 4.0 Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle