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View Structure Prediction Details

Protein: CHR25_ARATH
Organism: Arabidopsis thaliana
Length: 910 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHR25_ARATH.

Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL  60
   61 RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST GQLSRRLSAR KRFVPWGSST 120
  121 PVVVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 2b2uA
Description: Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [126-819]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTKLEASTN IERDEEEEVV CLPPDIEPLV LWQSEEDGMS NVTTIMVHSV LVKFLRPHQR  60
   61 EGVQFMFDCV SGLHGSANIN GCILADDMGL GKTLQSITLL YTLLCQGFDG TPMVKKAIIV 120
  121 TPTSLVSNWE AEIKKWVGDR IQLIALCEST RDDVLSGIDS FTRPRSALQV LIISYETFRM 180
  181 HSSKFCQSES CDLLICDEAH RLKNDQTLTN RALASLTCKR RVLLSGTPMQ NDLEEFFAMV 240
  241 NFTNPGSLGD AAHFRHYYEA PIICGREPTA TEEEKNLAAD RSAELSSKVN QFILRRTNAL 300
  301 LSNHLPPKII EVVCCKMTTL QSTLYNHFIS SKNLKRALAD NAKQTKVLAY ITALKKLCNH 360
  361 PKLIYDTIKS GNPGTVGFEN CLEFFPAEMF SGRSGAWTGG DGAWVELSGK MHVLSRLLAN 420
  421 LRRKTDDRIV LVSNYTQTLD LFAQLCRERR YPFLRLDGST TISKRQKLVN RLNDPTKDEF 480
  481 AFLLSSKAGG CGLNLIGANR LVLFDPDWNP ANDKQAAARV WRDGQKKRVY VYRFLSTGTI 540
  541 EEKVYQRQMS KEGLQKVIQH EQTDNSTRQG NLLSTEDLRD LFSFHGDVRS EIHEKMSCSR 600
  601 CQNDASGTEN IEEGNENNVD DNACQIDQED IGGFAKDAGC FNLLKNSERQ VGTPLEEDLG 660
  661 SWGHHFTSKS VPDAILQASA GDEVTFVFTN QVDG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1z3iX
Description: Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [820-910]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLVPIESNVS PKTVESEEHN RNQPVNKRAF NKPQQRPREP LQPLSLNETT KRVKLSTYKR  60
   61 LHGNSNIDDA QIKMSLQRPN LVSVNHDDDF V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1tf2A
Description: Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle