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Protein Overview: sgca-1

General Information:
Name(s) found: sgca-1 / CE40082 [WormBase]
Description(s) found:
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  • WBGene00019227 locus:sgca-1 status:Confirmed UniProt:Q1XFY3 protein_id:CCD72419.1 [WormBase]
  • gi|90568091|gb|ABD94098.1| Hypothetical protein H22K11.4b [Caenorhabditis elegans] [NCBI NR]
  • gi|115533476|ref|NP_001041261.1| SarcoGlyCan Alpha homolog family member (sgca-1) [Caenorhabditis elegans] [NCBI NR]
  • CE40082 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:Q1XFY3_CAEEL protein_id:ABD94098.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE40082 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:Q1XFY3_CAEEL protein_id:ABD94098.1| [wormORF-contam.fasta]
  • CE40082 WBGene00019227 status:Confirmed TR:Q1XFY3 protein_id:ABD94098.1 [wormpep160-contam.fasta]
  • Hypothetical protein H22K11.4b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • H22K11.4b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE40082 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:Q1XFY3 protein_id:ABD94098.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE40082 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:Q1XFY3 protein_id:CCD72419.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of H2L0C3, SarcoGlyCan Alpha homolog OS=Caenorhabditis elegans GN=sgca-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: sarcoglycan complex [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: protein binding [IEALink to PubMed article]
    calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVINLVEDS LYQGNTQQVF ELPINGLDVE DLVSNRDRKI SQLENSLRNT FRGRNVNPYI  60
   61 AGVRSRYIIP RGKEHIFKNS FGTMVYVGTQ QKFYPGTMSI VHNLQTMPEF CSNPSSVVMN 120
  121 KYFAPTFPVD WCNVAVRNIS SLEGEGIDEL IKDEQEEKLT KANPDQNLNE KPEQPPRELY 180
  181 GYSEHGFSIV LFAIILGVSI LFVFALVLIF FGSREGQKWR DDKTSGETLG EFISIRDNQK 240
  241 KLRELSLQRQ LLSMGPDTNS TAPSGIHSYL QSRSRAPSTS IARFSKSASR LNDKEDTIEL 300
  301 LPSVDHVPVG KQTVAEAAKQ CGSSLHLYRN PLSNESDEQD TESSDEDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] deduced N/A No confident structure predictions are available.
    2 View Details [238..348] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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