YRC Public Data Repository - Protein Structure Prediction

Protein:	sgca-1
Organism:	Caenorhabditis elegans
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sgca-1.

Description	E-value	Query Range	Subject Range
sgca-1 - status:Confirmed UniProt:O76633 protein_id:AAK39242.3	708.0	[0..1]	[348..111]

Back

Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVINLVEDS LYQGNTQQVF ELPINGLDVE DLVSNRDRKI SQLENSLRNT FRGRNVNPYI  60
   61 AGVRSRYIIP RGKEHIFKNS FGTMVYVGTQ QKFYPGTMSI VHNLQTMPEF CSNPSSVVMN 120
  121 KYFAPTFPVD WCNVAVRNIS SLEGEGIDEL IKDEQEEKLT KANPDQNLNE KPEQPPRELY 180
  181 GYSEHGFSIV LFAIILGVSI LFVFALVLIF FGSREGQKWR DDKTSGETLG EFISIRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQKKLRELSL QRQLLSMGPD TNSTAPSGIH SYLQSRSRAP STSIARFSKS ASRLNDKEDT  60
   61 IELLPSVDHV PVGKQTVAEA AKQCGSSLHL YRNPLSNESD EQDTESSDED N