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Protein Overview: snf-6

General Information:
Name(s) found: snf-6 / CE39951 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00004905 locus:snf-6 Sodium-dependent acetylcholine transporter status:Partially_confirmed UniProt:O76689 protein_id:CCD73021.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 714 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: neurotransmitter transport [IEALink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    Molecular Function: neurotransmitter:sodium symporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSSNDPEQ RNGRGMASGN NVDMSLYPPF IKQLDAKLPD YTREGDIEYP FEEITGVGDE  60
   61 NRIRGNWSNK SDYLLAVIGF TAGVGSFWKF PFLVFQHGGA AFLVPYLCML CLASLPMFFM 120
  121 EMVLGQFSSS AAISVWKVVP LFKGIGFAQV TISGFFAVFF NIISAWTLFY LINSFSFSIP 180
  181 WSNCANSWSG ENCTLGTRIQ CKEMNGTLLV NGSCIVEHAS SNETTVIPLH DLGSIPSLKY 240
  241 FQNDVLMLSK GVDDFGTLNW YLGLCVLACW IAVFLCLFQG VKSSGKVVYV AVIVPFIILT 300
  301 VLLTRLLTLD GSLAAVFYFL TPKWEILMDL HVWGEAAVQA FYSVSCCSGG LFTIASYSRF 360
  361 HNNIYKDIWL VLIVDVIVSL VGCLLTFSAI GFTCYEFAIS LDKFHIRDGF HLVFVFLAEA 420
  421 LAGVSVAPLY AGLFFIMILL VVHATQMFVV ETIVSSICDE YPERLRRNRR HVLTTVCALF 480
  481 ILLSIPFCLS SGLFWMELLT QFVLTWPLVV IAFLECMAIN WVYGVDNMLD NAKWIVGYWP 540
  541 PCYIFWKILF KFICPMVYLA ILCFLWLDWN SIQYESYQFP YWSILTAWCI ASFPLILIPI 600
  601 VGIWQFCIAK GTITQKWWRV LYPDDAWGPA MAIHRAEKFP LQIPEARRLL LPPEVEIASS 660
  661 RGVLQEEMPM SYDYNTSSAA DVRSNRSTGH GATDVRSVAA TNNTIPKFER ETAI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..623] PSI-BLAST 59.045757 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [624..714] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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