YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	92	0.92
Non-Cytoplasmic	93	101	0.73
Transmembrane Helix	102	124	0.86
Cytoplasmic	125	144	0.83
Transmembrane Helix	145	169	0.86
Non-Cytoplasmic	170	256	0.96
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	286	0.84
Transmembrane Helix	287	309	0.92
Non-Cytoplasmic	310	335	0.90
Transmembrane Helix	336	357	0.89
Cytoplasmic	358	367	0.83
Transmembrane Helix	368	392	0.89
Non-Cytoplasmic	393	419	0.80
Transmembrane Helix	420	442	0.84
Cytoplasmic	443	471	0.90
Transmembrane Helix	472	495	0.93
Non-Cytoplasmic	496	502	0.86
Transmembrane Helix	503	524	0.95
Cytoplasmic	525	543	0.94
Transmembrane Helix	544	567	0.89
Non-Cytoplasmic	568	583	0.91
Transmembrane Helix	584	608	0.91
Cytoplasmic	609	714	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSSNDPEQ RNGRGMASGN NVDMSLYPPF IKQLDAKLPD YTREGDIEYP FEEITGVGDE  60
   61 NRIRGNWSNK SDYLLAVIGF TAGVGSFWKF PFLVFQHGGA AFLVPYLCML CLASLPMFFM 120
  121 EMVLGQFSSS AAISVWKVVP LFKGIGFAQV TISGFFAVFF NIISAWTLFY LINSFSFSIP 180
  181 WSNCANSWSG ENCTLGTRIQ CKEMNGTLLV NGSCIVEHAS SNETTVIPLH DLGSIPSLKY 240
  241 FQNDVLMLSK GVDDFGTLNW YLGLCVLACW IAVFLCLFQG VKSSGKVVYV AVIVPFIILT 300
  301 VLLTRLLTLD GSLAAVFYFL TPKWEILMDL HVWGEAAVQA FYSVSCCSGG LFTIASYSRF 360
  361 HNNIYKDIWL VLIVDVIVSL VGCLLTFSAI GFTCYEFAIS LDKFHIRDGF HLVFVFLAEA 420
  421 LAGVSVAPLY AGLFFIMILL VVHATQMFVV ETIVSSICDE YPERLRRNRR HVLTTVCALF 480
  481 ILLSIPFCLS SGLFWMELLT QFVLTWPLVV IAFLECMAIN WVYGVDNMLD NAKWIVGYWP 540
  541 PCYIFWKILF KFICPMVYLA ILCFLWLDWN SIQYESYQFP YWSILTAWCI ASFPLILIPI 600
  601 VGIWQFCIAK GTITQKWWRV LYPDDAWGPA MAIHRAEKFP LQIPEARRLL LPPEVEIASS 660
  661 RGVLQEEMPM SYDYNTSSAA DVRSNRSTGH GATDVRSVAA TNNTIPKFER ETAI