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Protein Overview: XCL1

General Information:
Name(s) found: XCL1 [HGNC (HUGO)]
Description(s) found:
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  • gi|927651|dbj|BAA07825.1| cytokine [Homo sapiens] [NCBI NR]
  • gi|902002|gb|AAC50164.1| lymphotactin precursor [NCBI NR]
  • gi|895847|emb|CAA60198.1| CD8+T cell specific protein [Homo sapiens] [NCBI NR]
  • gi|62867031|gb|AAH69817.1| Chemokine (C motif) ligand 1 [Homo sapiens] [NCBI NR]
  • gi|5441340|emb|CAB46691.1| chemokine (C motif) ligand 1 [Homo sapiens] [NCBI NR]
  • gi|47683026|gb|AAH70309.1| Chemokine (C motif) ligand 1 [Homo sapiens] [NCBI NR]
  • gi|4506853|ref|NP_002986.1| chemokine (C motif) ligand 1 [Homo sapiens] [NCBI NR]
  • pir||ETHUL lymphotactin precursor - human [NCBI NR]
  • gi|1754611|dbj|BAA09859.1| SCM-1alpha precursor [Homo sapiens] [NCBI NR]
  • gi|1346471|sp|P47992.1|XCL1_HUMAN RecName: Full=Lymphotactin; AltName: Full=C motif chemokine 1; AltName: Full=Cytokine SCM-1; AltName: Full=ATAC; AltName: Full=Lymphotaxin; AltName: Full=SCM-1-alpha; AltName: Full=Small-inducible cytokine C1; AltName: Fu [NCBI NR]
  • gi|119611234|gb|EAW90828.1| chemokine (C motif) ligand 1 [Homo sapiens] [NCBI NR]
  • gi|119611233|gb|EAW90827.1| chemokine (C motif) ligand 2 [Homo sapiens] [NCBI NR]
  • chemokine (C motif) ligand 1 [HGNC (HUGO)]
  • Lymphotactin OS=Homo sapiens GN=XCL1 PE=1 SV=1 [Swiss-Prot]
  • (P47992) Lymphotactin precursor (XCL1) (Cytokine SCM-1) (ATAC) (Lymphotaxin) (SCM-1-alpha) (Small inducible cytokine C1) (XC chemokine ligand 1) [Swiss-Prot]
  • Lymphotactin precursor [hmr_yeast5_DM3-1_pombe.fasta]
  • chemokine (C motif) ligand 1; Lymphotactin; small inducible cytokine subfamily C, member 1 (lymphotactin) [HMR_022704.fasta]
  • chemokine (C motif) ligand 1; small inducible cytokine subfamily C, member 1 (lymphotactin); lymphotactin [071204_hmrz_cont.fasta]
  • chemokine (C motif) ligand 1 [Homo sapiens]gi|47683026|gb|AAH70309.1| Chemokine (C motif) ligand 1 [Homo sapiens]gi|5441340|emb|CAB46691.1| dJ738P11.3 (small inducible cytokine subfamily C, member 1 (lymphotactin) (Lymphotaxin, LTN)) [Homo sapiens]gi|2 [nrdb_11152004_Chlamydomonas]
  • Lymphotactin precursor (XCL1) (Cytokine SCM-1) (ATAC) (Lymphotaxin) (SCM-1-alpha) (Small inducible cytokine C1) (XC chemokine ligand 1) [Yateslab_human_na_07-28-2006_reversed.fasta]
  • Tax_Id=9606 Lymphotactin precursor [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_002995) small inducible cytokine subfamily C, member 1 (lymphotactin); Lymphotactin [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • chemokine (C motif) ligand 1 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • chemokine (C motif) ligand 1; small inducible cytokine subfamily C, member 1 (lymphotactin); lymphotactin [Homo sapiens] [HumanGallus06162005.fasta]
  • chemokine (C motif) ligand 1; Lymphotactin; small inducible cytokine subfamily C, member 1 (lymphotactin) [Homo sapiens] [human-NCBI-042104-rand.fasta]
  • Lymphotactin precursor (C motif chemokine 1) (Cytokine SCM-1) (ATAC) (Lymphotaxin) (SCM-1-alpha) (Small-inducible cytokine C1) (XC chemokine ligand 1) [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • chemokine (C motif) ligand 2 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chemokine (C motif) ligand 1 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • CD8+T cell specific protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • cytokine [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • SCM-1alpha precursor [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • lymphotactin precursor [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 LYMPHOTACTIN PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=XCL1 Lymphotactin [human-ipi-250309-contam.fasta]
  • IPI:IPI00026979.1|SWISS-PROT:P47992|ENSEMBL:ENSP00000356792|REFSEQ:NP_002986|H-INV:HIT000101474;HIT000218706|VEGA:OTTHUMP00000032498 Tax_Id=9606 Gene_Symbol=XCL1 Lymphotactin [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=XCL1 Lymphotactin precursor ENSG00000143184 IPI00026979 [drosphohumanreversed.fasta]
  • Tax_Id=9606 Gene_Symbol=XCL1 Lymphotactin precursor [EBI-IPI_human_3.30_06-28-2007_con_reversed.fasta]
  • P47992;Q52MA8; RecName: Full=Lymphotactin; AltName: Full=C motif chemokine 1; AltName: Full=Cytokine SCM-1; AltName: Full=ATAC; AltName: Full=Lymphotaxin; AltName: Full=SCM-1-alpha; AltName: Full=Small-inducible cytokine C1; AltName: Full=XC chemokine ligand 1; Flags: Precursor; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • Lymphotactin OS=Homo sapiens GN=XCL1 [011711_HMR.fasta]
  • GeneSymbol=XCL1 Synonyms=ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 lymphotactin [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • IPI:IPI00026979.1|SWISS-PROT:P47992|ENSEMBL:ENSP00000356792|REFSEQ:NP_002986|H-INV:HIT000101474|VEGA:OTTHUMP00000032498 Tax_Id=9606 Gene_Symbol=XCL1 Lymphotactin [ipi.HUMAN.20110912.fasta]
  • Lymphotactin GN=XCL1 [Doctor+uniprot-HUMAN-120911.fasta]
    • Organism: Homo sapiens
    Length: 114 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLILALLG ICSLTAYIVE GVGSEVSDKR TCVSLTTQRL PVSRIKTYTI TEGSLRAVIF  60
   61 ITKRGLKVCA DPQATWVRDV VRSMDRKSNT RNNMIQTKPT GTQQSTNTAV TLTG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 21.39794 Lymphotactin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chemokine activity
    		•  4.88837469516253 bayes_pls_golite062009
  • chemokine receptor binding
    		•  4.88837469516253 bayes_pls_golite062009
  • cytokine activity
    		•  4.54210263594448 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  4.42511063737115 bayes_pls_golite062009
  • binding
    		•  2.743598287572 bayes_pls_golite062009
  • receptor binding
    		•  2.56904769297015 bayes_pls_golite062009
  • protein binding
    		•  2.19284956337197 bayes_pls_golite062009
  • chemoattractant activity
    		•  1.08487334922776 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.623182191143301 bayes_pls_golite062009
  • signal transducer activity
    		•  0.00314411474321696 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.00314411474321696 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle