Protein Overview: gi|2136190, gi|1...

General Information:
Name(s) found:	gi\|4757926 [NCBI NR] gi\|405192 [NCBI NR] gi\|2136190 [NCBI NR] gi\|119596569 [NCBI NR] gi\|119596568 [NCBI NR] gi\|10635693 [NCBI NR]
Description(s) found: Found 33 descriptions. SHOW ALL	gi\|4757926\|ref\|NP_004893.1\| RNA binding motif protein 39 isoform b [Homo sapiens] [NCBI NR] gi\|405192\|gb\|AAA16346.1\| splicing factor [NCBI NR] pir\|\|I55595 splicing factor - human [NCBI NR] gi\|119596569\|gb\|EAW76163.1\| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo sapiens] [NCBI NR] gi\|119596568\|gb\|EAW76162.1\| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo sapiens] [NCBI NR] gi\|10635693\|emb\|CAC11119.1\| RNA binding motif protein 39 [Homo sapiens] [NCBI NR]
Organism:	Homo sapiens
Length:	524 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDIDIEAM LEAPYKKDEN KLSSANGHEE RSKKRKKSKS RSRSHERKRS KSKERKRSRD  60
   61 RERKKSKSRE RKRSRSKERR RSRSRSRDRR FRGRYRSPYS GPKFNSAIRG KIGLPHSIKL 120
  121 SRRRSRSKSP FRKDKSPVRE PIDNLTPEER DARTVFCMQL AARIRPRDLE EFFSTVGKVR 180
  181 DVRMISDRNS RRSKGIAYVE FVDVSSVPLA IGLTGQRVLG VPIIVQASQA EKNRAAAMAN 240
  241 NLQKGSAGPM RLYVGSLHFN ITEDMLRGIF EPFGRIESIQ LMMDSETGRS KGYGFITFSD 300
  301 SECAKKALEQ LNGFELAGRP MKVGHVTERT DASSASSFLD SDELERTGID LGTTGRLQLM 360
  361 ARLAEGTGLQ IPPAAQQALQ MSGSLAFGAV ADLQTRLSQQ TEASALAAAA SVQPLATQCF 420
  421 QLSNMFNPQT EEEVGWDTEI KDDVIEECNK HGGVIHIYVD KNSAQGNVYV KCPSIAAAIA 480
  481 AVNALHGRWF AGKMITAAYV PLPTYHNLFP DSMTATQLLV PSRR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	None Entered	Sample pIC145 from april 2005	Okada, M., et al. (2006)
View Run	gi\|14317902, gi\|...	No Comments	Cheeseman, I.M., et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..237]	FFAS03	6.26	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
2	View Details	[238..342]	PSI-BLAST	11.522879	solution structure of RNA binding domain in RNA binding motif protein 23
3	View Details	[343..416]	deduced	N/A	No confident structure predictions are available.
4	View Details	[417..524]	PSI-BLAST	5.39794	Solution structure of the second RNA binding domain from hypothetical protein BAB23448

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
	6.40066880991253	bayes_pls_golite062009
RNA binding	6.32219487559982	bayes_pls_golite062009
mRNA binding	4.87640532914983	bayes_pls_golite062009
nucleic acid binding	4.65259034341669	bayes_pls_golite062009
binding	3.48033873254013	bayes_pls_golite062009
snRNA binding	2.99850361909067	bayes_pls_golite062009
poly-pyrimidine tract binding	2.7133834347239	bayes_pls_golite062009
single-stranded RNA binding	2.55628738360472	bayes_pls_golite062009
U1 snRNA binding	1.97699928565988	bayes_pls_golite062009
transcription regulator activity	1.94691250607537	bayes_pls_golite062009
DNA binding	1.80828042019548	bayes_pls_golite062009
structural molecule activity	1.30816853575581	bayes_pls_golite062009
transcription factor activity	1.17242427495624	bayes_pls_golite062009
protein binding	1.05805521997665	bayes_pls_golite062009
sequence-specific DNA binding	0.327072171076297	bayes_pls_golite062009
mRNA 3'-UTR binding	0.229644510503376	bayes_pls_golite062009

2

No functions predicted.

3

No functions predicted.

4

Term	Confidence	Notes
RNA binding	6.73097473547076	bayes_pls_golite062009
	6.62953239642182	bayes_pls_golite062009
mRNA binding	5.29759606920196	bayes_pls_golite062009
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
snRNA binding	3.28448936696877	bayes_pls_golite062009
poly-pyrimidine tract binding	3.11990160533699	bayes_pls_golite062009
single-stranded RNA binding	2.93798024346416	bayes_pls_golite062009
U1 snRNA binding	2.26303528058407	bayes_pls_golite062009
transcription regulator activity	1.92450390013691	bayes_pls_golite062009
DNA binding	1.8021593476478	bayes_pls_golite062009
structural molecule activity	1.29928829870122	bayes_pls_golite062009
transcription factor activity	1.15127506309683	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.92

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle