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Protein Overview: IRC16

General Information:
Name(s) found: IRC16 / YPR038W [SGD]
Description(s) found:
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  • gi|74600079|sp|Q6B0V8.1|YPR38_YEAST RecName: Full=Putative uncharacterized protein YPR038W [NCBI NR]
  • gi|51014095|gb|AAT93341.1| YPR038W [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2132258|pir||S69474 hypothetical protein YPR038w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Putative uncharacterized protein YPR038W OS=Saccharomyces cerevisiae GN=YPR038W PE=5 SV=1 [Swiss-Prot]
  • Questionable protein [mips]
  • [DUBIOUS] Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene YPR037C; null mutant displays increased levels of spontaneous Rad52p foci [SGD]
  • Chr XVI from 646831-647190 [yeastorf3.fasta]
  • YPR038W, Chr XVI from 646831-647190 [yeast_orfs2]
  • YPR038W [Saccharomyces cerevisiae]gi|2132258|pir||S69474 hypothetical protein YPR038w - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • YPR038W SGDID:S0006242, Chr XVI from 646831-647190, Dubious ORF [yeastflysequest.fasta]
  • YPR038W SGDID:S0006242, Chr XVI from 646833-647192, Dubious ORF [10112005cervSGD.fasta]
  • YPR038W SGDID:S000006242, Chr XVI from 646833-647192, Dubious ORF, "Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci" [yeast-contam.fasta]
  • IRC16 SGDID:S000006242, Chr XVI from 646833-647192, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene YPR037C; null mutant displays increa [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • YPR038W [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • hypothetical protein YPR038w - yeast (Saccharomyces cerevisiae) [nr-271106-contam.fasta]
  • IRC16 SGDID:S000006242, Chr XVI from 646833-647192, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene YPR037C; null mutant displays increased levels of spontaneous Rad52p foci" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • IRC16 SGDID:S000006242, Chr XVI from 646836-647195, Genome Release 64-1-1, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene YPR037C; null mutant displays increased levels of spontaneous Rad52p foci" [yeast-030211-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 119 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCFSISFNR ASFFSAAAPC TSSIPDFALI RPGVAMDSSL DEKNIHRPMI PNAATILMAW  60
   61 LLLTICFIPS FLAQSVQTFL FTNHQPSRLL VFITHVYCLM IKPFVLYFWF LFPLRLPGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen MPE1 IRC16 2 Unpublished Fields Lab Data
    View Screen CDC53 IRC16 1 Unpublished Fields Lab Data
    View Screen SPT21 IRC16 1 Unpublished Fields Lab Data
    View Screen ARE2 IRC16 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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