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Protein Overview: YNL024C

General Information:
Name(s) found: YNL024C [SGD]
Description(s) found:
Found 32 descriptions.
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  • Putative protein of unknown function with seven beta-strand methyltransferase motif; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL024C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: S-adenosylmethionine-dependent methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIFGGFGD LVVPRPKEHL GQTDLSFGGK LLPALKICED GGESGCGGKV WIAGELLCEY  60
   61 ILEKSVDHLL SKTVNGTKQF KKVLELGSGT GLVGLCVGLL EKNTFHDGTK VYVTDIDKLI 120
  121 PLLKRNIELD EVQYEVLARE LWWGEPLSAD FSPQEGAMQA NNVDLVLAAD CVYLEEAFPL 180
  181 LEKTLLDLTH CINPPVILMA YKKRRKADKH FFNKIKRNFD VLEITDFSKF EHYLKERTHL 240
  241 FQLIRK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) MSF1 TMA16 YNL024C

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YNL024C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 21.522879 Arginine methyltransferase, HMT1
    2 View Details [153..246] PSI-BLAST 27.69897 Structure of the Predominant protein arginine methyltransferase PRMT1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • rRNA methyltransferase activity
    		•  2.5924681776558 bayes_pls_golite062009
  • methyltransferase activity
    		•  2.33136602917122 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.27124437527134 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  2.25588491617587 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  2.20971449561619 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  1.66698836347262 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • transferase activity
    		•  1.07321114919891 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  0.794703281700029 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  0.716476158062361 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  0.119135438445203 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  0.0854264678700428 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle