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Protein Overview: YMR279C

General Information:
Name(s) found: YMR279C [SGD]
Description(s) found:
Found 23 descriptions.
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  • Putative protein of unknown function; identified as a heat-induced gene in a high-throughout screen; YMR279C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 540 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSIFKKKTS VQGTDSEIDE KITVKAKDKV VVSTEDEEVT TIVSSTKSTQ VTNDSPWQDP  60
   61 TYFSSFGKEL MFIATCMLAQ LLNQAGQTHA LCIMNVLSKS FNSEANNQAW LMASFPLAAG 120
  121 SFILISGRLG DIYGLKKMLI VGYVIVIVWS IISGLSKYSN SDAFFITSRA FQGVGIAFIL 180
  181 PNIMGLVGHV YKVGSFRKNI VISFIGACAP TGGMFGGLFG GLIVTEDPNQ WPWVFYAFGI 240
  241 ATFLSLLMAW YSIPNNVPTN IHGLSMDWTG SALAIIGLIL FNFVWNQAPI VGWDKPYIIV 300
  301 LLIISVIFLV AFFVYESKYA EVPLLPRAMT KNRHMIMILL AVFLGWGSFG IWTFYYVSFQ 360
  361 LNLRHYSPVW TGGTYFVFVI FGSMAAFFVA FSIKRLGPAL LLCFSLMAFD AGSIMFSVLP 420
  421 VEQSYWKLNF AMQAILCFGM DLSFPASSII LSDGLPMQYQ GMAGSLVNTV INYSASLCLG 480
  481 MGGTVEHQIN KSGNDLLKGY RAAVYLGVGL ASLGVVISVT YMLENLWNRH RKSEDRSLEA 540
  541

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..253]
    [321..540]    		 PSI-BLAST 8.09691 No description for 1ja5A_ was found.
    2 View Details [254..320] PSI-BLAST 8.09691 No description for 1ja5A_ was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.3426261924492 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.29689809004391 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.94035843948137 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.5181741634556 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • binding
    		•  1.01584233411372 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle