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Protein Overview: SCS7

General Information:
Name(s) found: SCS7 / YMR272C [SGD]
Description(s) found:
Found 31 descriptions.
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  • Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: membrane [RCALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: very long-chain fatty acid metabolic process [IMPLink to PubMed article]
    sphingolipid metabolic process [IGILink to PubMed article][IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: sphingosine hydroxylase activity [IMPLink to PubMed articleLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTSKTLE LFSKKTVQEH NTANDCWVTY QNRKIYDVTR FLSEHPGGDE SILDYAGKDI  60
   61 TEIMKDSDVH EHSDSAYEIL EDEYLIGYLA TDEEAARLLT NKNHKVEVQL SADGTEFDST 120
  121 TFVKELPAEE KLSIATDYSN DYKKHKFLDL NRPLLMQILR SDFKKDFYVD QIHRPRHYGK 180
  181 GSAPLFGNFL EPLTKTAWWV VPVAWLPVVV YHMGVALKNM NQLFACFLFC VGVFVWTLIE 240
  241 YGLHRFLFHF DDWLPESNIA FATHFLLHGC HHYLPMDKYR LVMPPTLFVI LCAPFYKLVF 300
  301 ALLPLYWAYA GFAGGLFGYV CYDECHFFLH HSKLPPFMRK LKKYHLEHHY KNYQLGFGVT 360
  361 SWFWDEVFGT YLGPDAPLSK MKYE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen CNS1 SCS7 1 Unpublished Fields Lab Data
    View Screen NUC1 SCS7 1 Unpublished Fields Lab Data
    View Screen UBC7 SCS7 1 Unpublished Fields Lab Data
    View Screen ADH2 SCS7 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SCS7 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 118.09691 Cytochrome b5
    2 View Details [113..178] PSI-BLAST 5.522879 cytochrome b5 reductase
    3 View Details [179..384] MSA 1.012965 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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