YRC Public Data Repository - Protein Structure Prediction

Protein:	SCS7
Organism:	Saccharomyces cerevisiae
Length:	384 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCS7.

Description	E-value	Query Range	Subject Range
gi\|151945979 - gi\|151945979\|gb\|EDN64211.1\| desaturase [Saccharomyces cerevisiae YJM789] gi\|190408497 - gi\|190408497\|gb\|EDV11762.1\| desaturase [Saccharomyces cerevisiae RM11-1a] SCS7_YEAST - Ceramide very long chain fatty acid hydroxylase SCS7 OS=Saccharomyces cerevisiae (strain ATCC 204508... SCS7 - Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very...	0.0	[1..384]	[1..384]
gi\|18376335 - gi\|18376335\|emb\|CAD21081.1\| related to fatty acid hydroxylase [Neurospora crassa]	0.0	[5..372]	[2..352]
SPAC19G12.08 - fatty acid hydroxylase SCS7_SCHPO - Ceramide very long chain fatty acid hydroxylase-like protein C19G12.08 OS=Schizosaccharomyces pombe ...	0.0	[22..371]	[5..332]
gi\|33636752, gi\|... - gi\|33636752\|ref\|NP_077282.2\| fatty acid 2-hydroxylase [Homo sapiens], gi\|16554016\|dbj\|BAB71632.1\| un...	3.0E-96	[12..380]	[11..370]
CG30502-PB - This gene is referred to in FlyBase by the symbol Dmel\CG30502 (CG30502, FBgn0050502). It is a prote...	3.0E-88	[16..384]	[6..351]
FAH1_ARATH - Dihydroceramide fatty acyl 2-hydroxylase FAH1 OS=Arabidopsis thaliana GN=FAH1 PE=1 SV=1	7.0E-82	[148..379]	[8..235]
gi\|125588126, gi... - gi\|34897078\|ref\|NP_909885.1\| putative fatty acid hydroxylase [Oryza sativa (japonica cultivar-group)...	3.0E-79	[148..372]	[8..228]
CE08370 - Yeast hypothetical 44.9 KD protein like status:Confirmed UniProt:Q9XVS0 protein_id:CAB02759.1	3.0E-72	[21..371]	[5..311]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTSKTLE LFSKKTVQEH NTANDCWVTY QNRKIYDVTR FLSEHPGGDE SILDYAGKDI  60
   61 TEIMKDSDVH EHSDSAYEIL EDEYLIGYLA TDEEAARLLT NKNHKVEVQL SA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.09691
Match:	1bfx__
Description:	Cytochrome b5
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [113-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTEFDSTTF VKELPAEEKL SIATDYSNDY KKHKFLDLNR PLLMQILRSD FKKDFYVDQI  60
   61 HRPRHY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1ndh__
Description:	cytochrome b5 reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [179-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGSAPLFGN FLEPLTKTAW WVVPVAWLPV VVYHMGVALK NMNQLFACFL FCVGVFVWTL  60
   61 IEYGLHRFLF HFDDWLPESN IAFATHFLLH GCHHYLPMDK YRLVMPPTLF VILCAPFYKL 120
  121 VFALLPLYWA YAGFAGGLFG YVCYDECHFF LHHSKLPPFM RKLKKYHLEH HYKNYQLGFG 180
  181 VTSWFWDEVF GTYLGPDAPL SKMKYE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits