Protein Overview: TDA4

General Information:
Name(s) found:	TDA4 / YJR116W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6322576\|ref\|NP_012650.1\| Putative protein of unknown function; Yjr116wp [Saccharomyces cerevisiae] [NCBI NR] gi\|1352917\|sp\|P47153.1\|YJ86_YEAST RecName: Full=Uncharacterized TLC domain-containing protein YJR116W [NCBI NR] pir\|\|S57139 probable membrane protein YJR116w - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1015835\|emb\|CAA89646.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Uncharacterized TLC domain-containing protein YJR116W OS=Saccharomyces cerevisiae GN=YJR116W PE=1 SV=1 [Swiss-Prot] Protein of unknown function [mips] Putative protein of unknown function [SGD] YJR116W, Chr X from 640518-641357 [yeast_orfs2] Chr X from 640518-641357 [yeastorf3.fasta] Chr X from 640519-641358 [yeastorf4.fasta] Chr X from 640520-641359 [yeastorf5.fasta] (P47153) Hypothetical 32.0 kDa protein in NNF1-STE24 intergenic region [4932.FASTACCERV.txt] YJR116W SGDID:S0003877, Chr X from 640740-641579, Uncharacterized ORF [yeastflysequest.fasta] Yjr116wp [Saccharomyces cerevisiae]gi\|1015835\|emb\|CAA89646.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|1352917\|sp\|P47153\|YJ86_YEAST Hypothetical 32.0 kDa protein in NNF1-STE24 intergenic regiongi\|1078275\|pir\|\|S57139 probable membrane protei [nrdb_11152004_Chlamydomonas] YJR116W SGDID:S000003877, Chr X from 640740-641579, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YJR116W SGDID:S000003877, Chr X from 640819-641658, Uncharacterized ORF, "Hypothetical protein" [yeast-contam.fasta] YJR116W SGDID:S000003877, Chr X from 640816-641655, Uncharacterized ORF, "Putative protein of unknown function" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] YJR116W SGDID:S000003877, Chr X from 640815-641654, Uncharacterized ORF, "Putative protein of unknown function" [yeast-200209-contam.fasta] hypothetical protein; Yjr116wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Uncharacterized TLC domain-containing protein YJR116W [nr-271106-contam.fasta] [chemostatdb.fasta] TDA4 SGDID:S000003877, Chr X from 640825-641664, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; null mutant is sensitive to expression of the top1-T722A allele" [yeast-030211-contam.fasta] TDA4 SGDID:S000003877, Chr X from 640825-641664, Genome Release 64-2-1, Uncharacterized ORF, "Putative protein of unknown function; null mutant is sensitive to expression of the top1-T722A allele" [20141208_orf_trans.fasta] YJR116W SGDID:S000003877, Chr X from 640825-641664, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; null mutant is sensitive to expression of the top1-T722A allele" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	279 amino acids
Gene Ontology:
Cellular Component:	cellular_component [ND]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANSTTTAI GLTSPFEKLS FFPHSSNLIL AHLHEIIFSF VFYQLAFSVV APFLNKVVFR  60
   61 KHYTTIRDPL LKIDFNVHTV SMIQAVVSNT VLLPTLTTPM HYNVVTYTDS YSSMVSSLSA 120
  121 GYFIWDLTMC VRYFKLYGLE FTGHAIGSVY VMLLSLRPFC QPWIGRFLIY EASTPFVNIN 180
  181 WFIMQCNAKS KNSIPLWFNV VNGLLLMTVF FVVRICWGSI ASALLFRQMW KVRDELPKFS 240
  241 AVTMMSLNIF MNLLNVLWFK KMIRIAKKLA KPAPTSKLD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	CDC53	TDA4	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	TDA4	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..279]	MSA	6.029972	View MSA. No confident structure predictions are available.
2	View Details	[66..279]	MSA	10.103995	View MSA. No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2