Protein Overview: UBX6

General Information:
Name(s) found:	UBX6 / YJL048C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6322413\|ref\|NP_012487.1\| UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline; Ubx6p [Saccharomyces cerevisiae] [NCBI NR] gi\|51012829\|gb\|AAT92708.1\| YJL048C [Saccharomyces cerevisiae] [NCBI NR] gi\|1352978\|sp\|P47049.1\|UBX6_YEAST RecName: Full=UBX domain-containing protein 6 [NCBI NR] pir\|\|S56820 hypothetical protein YJL048c - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1008181\|emb\|CAA89339.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] (P47049) Hypothetical protein YJL048C [Swiss-Prot] UBX domain-containing protein 6 OS=Saccharomyces cerevisiae GN=UBX6 PE=1 SV=1 [Swiss-Prot] UBX6 UBX (ubiquitin regulatory X) domain-containing protein, transcription is repressed when cells are grown in media containing inositol and choline [mips] UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline [SGD] YJL048C, Chr X from 347143-348333, reverse complement [yeast_orfs2] Chr X from 347143-348333, reverse complement [yeastorf3.fasta] Chr X from 348333-347143, reverse complement [yeastorf5.fasta] UBX6 SGDID:S0003584, Chr X from 348553-347363, reverse complement, Uncharacterized ORF [yeastflysequest.fasta] UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline [Saccharomyces cerevisiae]gi\|51012829\|gb\|AAT92708.1\| YJL048C [Saccharomyces cerevi [nrdb_11152004_Chlamydomonas] UBX6 SGDID:S000003584, Chr X from 348553-347363, reverse complement, Uncharacterized ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] UBX6 SGDID:S000003584, Chr X from 348632-347442, reverse complement, Uncharacterized ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and [yeast-contam.fasta] UBX6 SGDID:S000003584, Chr X from 348632-347442, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] UBX6 SGDID:S000003584, Chr X from 348631-347441, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline [yeast-200209-contam.fasta] UBX domain-containing protein 6 [nr-271106-contam.fasta] UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline; Ubx6p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YJL048C [Saccharomyces cerevisiae] [nr-271106-contam.fasta] UBX6 SGDID:S000003584, Chr X from 348631-347441, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline" [yeast-bovrabprots.fasta] UBX6 SGDID:S000003584, Chr X from 348632-347442, reverse complement, Uncharacterized ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline" [yeast-contam_custom.fasta] [chemostatdb.fasta] UBX domain-containing protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX6 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] UBX6 SGDID:S000003584, Chr X from 348637-347447, Genome Release 64-1-1, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline" [yeast-030211-contam.fasta] UBX6 SGDID:S000003584, Chr X from 348637-347447, Genome Release 64-2-1, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline; UBX6 has a paralog, UBX7, that arose from the whole genome duplication" [20141208_orf_trans.fasta] TR8363\|c0_g1_i1\|g.5946 ORF TR8363\|c0_g1_i1\|g.5946 TR8363\|c0_g1_i1\|m.5946 type:complete len:397 (+) TR8363\|c0_g1_i1:32-1222(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta] YJL048C SGDID:S000003584, Chr X from 348637-347447, Genome Release 64-1-1, reverse complement, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta] ID=asmbl_5994\|g.3822 ORF ID=asmbl_5994\|g.3822 ID=asmbl_5994\|m.3822 type:complete len:397 (+) ID=asmbl_5994:751-1941(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	396 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA]
Biological Process:	sporulation resulting in formation of a cellular spore [IMP] ubiquitin-dependent protein catabolic process [IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEMSGIDSL FHDRVVHDYS HTSEQVIVVY ISSAAGDNSW LHQWFKPGNL SDEERENILW  60
   61 VRLVNGTKEC LLFKSIFPSS SAPSINILQN GLLECSIQGN SLSREQDPWE TFINGLQSVF 120
  121 KGQVTKRKLF SKSNEEYQRV KRMIQNDKLE RKYVFQNTND PQRKPQKWKQ LTVTDNVSYK 180
  181 SQKGFLAQNY CTLQLKLPNG YTISNTFPPQ TKLHKVRMWL DYNCYDDGTP YLFHRNIPRV 240
  241 TLTRNDELKS LQELDLLPRS TLILEPLEAN NKTFDYMEQS SLLHKVYSGL TSFWAKEPEV 300
  301 DASSSRLGYQ RLGTNVSNSA NYSLQKLSSL DMVSDGGGGG GGDSMTPSAY TTPRMYPSNG 360
  361 TSQLRQNVSE LNLSSNNSAS NTKVRTLGYS NNNGNN

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	MDM30	UBX6	2	Uetz P, et al. (2000)
View Screen	UBX6	UBX6	2	Unpublished Fields Lab Data
View Screen	IMP4	UBX6	2	Unpublished Fields Lab Data
View Screen	UBX6	SHE2	2	Uetz P, et al. (2000)
View Screen	UBX6	DOA1	2	Unpublished Fields Lab Data
View Screen	CLB5	UBX6	2	Unpublished Fields Lab Data
View Screen	UBX6	NFI1	2	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	UBX6	Huh WK, et al. (2003)
View Data	UBX6 and NIC96	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..67]	deduced	N/A	No confident structure predictions are available.
2	View Details	[68..184]	MSA	9.081997	View MSA. No confident structure predictions are available.
3	View Details	[185..302]	PSI-BLAST	17.69897	Fas-assosiated factor 1, Faf1
4	View Details	[303..396]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2