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Protein Overview: RSC30

General Information:
Name(s) found: RSC30 / YHR056C [SGD]
Description(s) found:
Found 7 descriptions.
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  • Component of the RSC chromatin remodeling complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc3p; null mutants are osmosensitive [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 832 amino acids

    Gene Ontology:
    Cellular Component: RSC complex [IDALink to PubMed article][IPILink to PubMed article]
    Biological Process: ATP-dependent chromatin remodeling [IDALink to PubMed article]
    regulation of transcription, DNA-dependent [IMPLink to PubMed article]
    double-strand break repair via nonhomologous end joining [IDALink to PubMed article][IMPLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    DNA-dependent ATPase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVPSASGM STHGNGQGSN HFSQGNGVNQ KNVMIQTQYP IMQTSIEAFN FSFNPSVDTA  60
   61 MQWTKAASYQ NNNTNNNTAP RQNSSTVSSN VHGNTIVRSD SPDVPSMDQI REYNTRLQLV 120
  121 NAQSFDYTDN PYSFNVGINQ DSAVFDLMTS PFTQEEVLIK EIDFLKNKLL DLQSLQLKSL 180
  181 KEKSNLNADN TTANKINKTG ENSKKGKVDG KRAGFDHQTS RTSQSSQKYF TALTITDVQS 240
  241 LVQVKPLKDT PNYLFTKNFI IFRDHYLFKF YNILHDICHI NQFKVSPPNN KNHQQYMEVC 300
  301 KVNFPPKAII IETLNSESLN NLNIEEFLPI FDKTLLLEFV HNSFPNGDTC PSFSTVDLPL 360
  361 SQLTKLGELT VLLLLLNDSM TLFNKQAINN HVSALMNNLR LIRSQITLIN LEYYDQETIK 420
  421 FIAITKFYES LYMHDDHKSS LDEDLSCLLS FQIKDFKLFH FLKKMYYSRH SLLGQSSFMV 480
  481 PAAENLSPIP ASIDTNDIPL IANDLKLLET QAKLINILQG VPFYLPVNLT KIESLLETLT 540
  541 MGVSNTVDLY FHDNEVRKEW KDTLNFINTI VYTNFFLFVQ NESSLSMAVQ HSSNNNKTSN 600
  601 SERCAKDLMK IISNMHIFYS ITFNFIFPIK SIKSFSSGNN RFHSNGKEFL FANHFIEILQ 660
  661 NFIAITFAIF QRCEVILYDE FYKNLSNEEI NVQLLLIHDK ILEILKKIEI IVSFLRDEMN 720
  721 SNGSFKSIKG FNKVLNLIKY MLRFSKKKQN FARNSDNNNV TDYSQSAKNK NVLLKFPVSE 780
  781 LNRIYLKFKE ISDFLMEREV VQRSIIIDKD LESDNLGITT ANFNDFYDAF YN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ASF1 3912: TAP-tagged, strain background includes hpc2(delta) Green EM, et al (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..477] deduced N/A No confident structure predictions are available.
    2 View Details [478..832] MSA 1.00386 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle