YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PGD1

General Information:
Name(s) found: PGD1 / YGL025C [SGD]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for basal and activated transcription; direct target of Cyc8p-Tup1p transcriptional corepressor [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 431 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to drug [IMPLink to PubMed article]
    telomere maintenance [IMPLink to PubMed article]
    transcription from RNA polymerase II promoter [IDALink to PubMed article]
    Molecular Function: RNA polymerase II transcription mediator activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSEILKRT TETVTKTSSI RQRKTDTTAV KTTGMDSIIP AGVKLDDLQV ILAKNENETR  60
   61 DKVCKQINEA RDEILPLRLQ FNEFIQIMAN IDQEGSKQAD RMAKYLHIRD KILQLNDRFQ 120
  121 TLSSHLEALQ PLFSTVPEYL KTADNRDRSF QLLEPLSTYN KNGNAVCSTA TVVSTNHSAA 180
  181 ASTPTTTATP HANPITHAHS LSNPNSTATM QHNPLAGKRG PKSGSTMGTP TVHNSTAAAP 240
  241 IAAPKKPRKP RQTKKAKAQA QAQAQAQAQV YAQQSTVQTP ITASMAAALP NPTPSMINSV 300
  301 SPTNVMGTPL TNMMSPMGNA YSMGAQNQGG QVSMSQFNGS GNGSNPNTNT NSNNTPLQSQ 360
  361 LNLNNLTPAN ILNMSMNNDF QQQQQQQQQQ QQPQPQYNMN MGMNNMNNGG KELDSLDLNN 420
  421 LELGGLNMDF L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..431] ORFEUS 13.84 RBP1


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle