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Protein Overview: YCG1

General Information:
Name(s) found: YCG1 / YDR325W [SGD]
Description(s) found:
Found 6 descriptions.
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  • Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1051 amino acids

    Gene Ontology:
    Cellular Component: nuclear condensin complex [IGILink to PubMed article][ISSLink to PubMed article]
    Biological Process: meiotic chromosome condensation [IMPLink to PubMed article]
    mitotic chromosome condensation [IGILink to PubMed article][IMPLink to PubMed article][TASLink to PubMed article]
    mitotic sister chromatid segregation [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTALDKTKK LTAAPIMQDP DGIDINTKIF NSVAEVFQKA QGSYAGHRKH IAVLKKIQSK  60
   61 AVEQGYEDAF NFWFDKLVTK ILPLKKNEII GDRIVKLVAA FIASLERELI LAKKQNYKLT 120
  121 NDEEGIFSRF VDQFIRHVLR GVESPDKNVR FRVLQLLAVI MDNIGEIDES LFNLLILSLN 180
  181 KRIYDREPTV RIQAVFCLTK FQDEEQTEHL TELSDNEENF EATRTLVASI QNDPSAEVRR 240
  241 AAMLNLINDN NTRPYILERA RDVNIVNRRL VYSRILKSMG RKCFDDIEPH IFDQLIEWGL 300
  301 EDRELSVRNA CKRLIAHDWL NALDGDLIEL LEKLDVSRSS VCVKAIEALF QSRPDILSKI 360
  361 KFPESIWKDF TVEIAFLFRA IYLYCLDNNI TEMLEENFPE ASKLSEHLNH YILLRYHHND 420
  421 ISNDSQSHFD YNTLEFIIEQ LSIAAERYDY SDEVGRRSML TVVRNMLALT TLSEPLIKIG 480
  481 IRVMKSLSIN EKDFVTMAIE IINDIRDDDI EKQEQEEKIK SKKINRRNET SVDEEDENGT 540
  541 HNDEVNEDEE DDNISSFHSA VENLVQGNGN VSESDIINNL PPEKEASSAT IVLCLTRSSY 600
  601 MLELVNTPLT ENILIASLMD TLITPAVRNT APNIRELGVK NLGLCCLLDV KLAIDNMYIL 660
  661 GMCVSKGNAS LKYIALQVIV DIFSVHGNTV VDGEGKVDSI SLHKIFYKVL KNNGLPECQV 720
  721 IAAEGLCKLF LADVFTDDDL FETLVLSYFS PINSSNEALV QAFAFCIPVY CFSHPAHQQR 780
  781 MSRTAADILL RLCVLWDDLQ SSVIPEVDRE AMLKPNIIFQ QLLFWTDPRN LVNQTGSTKK 840
  841 DTVQLTFLID VLKIYAQIEK KEIKKMIITN INAIFLSSEQ DYSTLKELLE YSDDIAENDN 900
  901 LDNVSKNALD KLRNNLNSLI EEINERSETQ TKDENNTAND QYSSILGNSF NKSSNDTIEH 960
  961 AADITDGNNT ELTKTTVNIS AVDNTTEQSN SRKRTRSEAE QIDTSKNLEN MSIQDTSTVA1020
 1021 KNVSFVLPDE KSDAMSIDEE DKDSESFSEV C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run TAM41 No Comments Hazbun TR, et al. (2003)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..537] MSA 2.010903 View MSA. No confident structure predictions are available.
    2 View Details [538..837] deduced N/A No confident structure predictions are available.
    3 View Details [838..1051] MSA 1.008991 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle