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Protein Overview: SED1

General Information:
Name(s) found: SED1 / YDR077W [SGD]
Description(s) found:
Found 31 descriptions.
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  • Major stress-induced structural GPI-cell wall glycoprotein in stationary-phase cells, associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 338 amino acids

    Gene Ontology:
    Cellular Component: fungal-type cell wall [IDALink to PubMed article][ISSLink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: cellular cell wall organization [IEPLink to PubMed article][IMPLink to PubMed article]
    mitochondrial genome maintenance [IMPLink to PubMed article]
    Molecular Function: structural constituent of cell wall [IEPLink to PubMed article][IMPLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSTVLLSA GLASTTLAQF SNSTSASSTD VTSSSSISTS SGSVTITSSE APESDNGTST  60
   61 AAPTETSTEA PTTAIPTNGT STEAPTTAIP TNGTSTEAPT DTTTEAPTTA LPTNGTSTEA 120
  121 PTDTTTEAPT TGLPTNGTTS AFPPTTSLPP SNTTTTPPYN PSTDYTTDYT VVTEYTTYCP 180
  181 EPTTFTTNGK TYTVTEPTTL TITDCPCTIE KPTTTSTTEY TVVTEYTTYC PEPTTFTTNG 240
  241 KTYTVTEPTT LTITDCPCTI EKSEAPESSV PVTESKGTTT KETGVTTKQT TANPSLTVST 300
  301 VVPVSSSASS HSVVINSNGA NVVVPGALGL AGVAMLFL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) KRE1 SED1 YLR194C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SED1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..338] ORFEUS 14.81 Sec24
    2 View Details [237..338] MSA 1.112993 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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