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Protein Overview: SRO9

General Information:
Name(s) found: SRO9 / YCL037C [SGD]
Description(s) found:
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  • pir||S19365 hypothetical protein YCL037c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|5326|emb|CAA42379.1| La motif-containing protein [Saccharomyces cerevisiae] [NCBI NR]
  • gi|140370|sp|P25567|SRO9_YEAST Protein SRO9 [NCBI NR]
  • (P25567) Protein SRO9 [Swiss-Prot]
  • SRO9 - La motif-containing proteins that modulate mRNA translation [mips]
  • Cytoplasmic RNA-binding protein that associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif [SGD]
  • SRO9, Chr III from 57374-58774, reverse complement [yeast_orfs2]
  • Chr III from 57374-58774, reverse complement [yeastorf3.fasta]
  • (P25567) SRO9 protein [4932.FASTACCERV.txt]
  • La motif-containing protein [Saccharomyces cerevisiae]gi|140370|sp|P25567|SRO9_YEAST SRO9 proteingi|83157|pir||S19365 hypothetical protein YCL037c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • La motif-containing protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: polysome [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    translation [IPILink to PubMed article]
    Molecular Function: RNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFWDPRSV IEHQDYSGPA NVFHLLFTSL PTMSAETAAA NTATAPVPEV QEQESSKSKQ  60
   61 VNLTPAPLPT SSPWKLAPTE IPVSTISIED LDATRKKKNR TPTPKSSTAT KWVPIKASIT 120
  121 VSGTKRSGSK NGASNGNSNK SKNNKTAASS TSSSNANRKK KHHQHNAKKQ QQMKKDGFES 180
  181 AVGEEDSKDA TSQENGQSTQ QQQPPHHRNH HHSHHHNSNG PQRRKFHNSN NAGMPQNQGF 240
  241 PPQFKPYQGR NARNNNNNRS KYHNHFHHNQ QHPQQPMVKL QQQFYPVQPV LMAINNIARQ 300
  301 IEYYFSEENL TVDNYLRSKL SKDGFAPLSL ISKFYRVVNM SFGGDTNLIL AALREIVANE 360
  361 AATVNVAEGT LAAKEGDNVT GEAKEPSPLD KYFVRSKSWS NWLPETFETE INIEKELVGD 420
  421 ALDQFMISLP PVPQQEEESS TELASQEQET KEDSAPVAAG ESESSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ALG13 No Comments Hazbun TR, et al. (2003)
    View Run NAF1 No Comments Hazbun TR, et al. (2003)
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..279] ORFEUS 9.55 RBP1
    2 View Details [280..466] MSA 2.052985 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle