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View Structure Prediction Details

Protein: SRO9
Organism: Saccharomyces cerevisiae
Length: 466 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO9.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-74 [50..463] [296..688]
gi|3882183 - gi|3882183|dbj|BAA34451.1| KIAA0731 protein [Homo sapiens]
9.0E-62 [14..401] [71..513]
SLF1_YEAST - Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLF1 PE=1 SV=1
SLF1 - RNA binding protein that associates with polysomes; proposed to be involved in regulating mRNA trans...
5.0E-59 [49..453] [13..437]
LRP1A_ARATH - La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1
1.0E-55 [43..465] [5..424]
gi|82889401, gi|... - gi|94536725|ref|NP_001035489.1| La ribonucleoprotein domain family, member 2 [Mus musculus], gi|8288...
2.0E-50 [100..389] [3..313]
gi|840708 - gi|840708|dbj|BAA09334.1| trans-sialidase [Trypanosoma cruzi]
7.0E-44 [10..292] [671..947]
gi|7025386 - gi|7025386|gb|AAF35862.1|AF221108_1 La related protein [Drosophila melanogaster]
2.0E-39 [8..414] [150..575]

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Predicted Domain #1
Region A:
Residues: [1-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFWDPRSV IEHQDYSGPA NVFHLLFTSL PTMSAETAAA NTATAPVPEV QEQESSKSKQ  60
   61 VNLTPAPLPT SSPWKLAPTE IPVSTISIED LDATRKKKNR TPTPKSSTAT KWVPIKASIT 120
  121 VSGTKRSGSK NGASNGNSNK SKNNKTAASS TSSSNANRKK KHHQHNAKKQ QQMKKDGFES 180
  181 AVGEEDSKDA TSQENGQSTQ QQQPPHHRNH HHSHHHNSNG PQRRKFHNSN NAGMPQNQGF 240
  241 PPQFKPYQGR NARNNNNNRS KYHNHFHHNQ QHPQQPMVK

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.55
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [280-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQQQFYPVQP VLMAINNIAR QIEYYFSEEN LTVDNYLRSK LSKDGFAPLS LISKFYRVVN  60
   61 MSFGGDTNLI LAALREIVAN EAATVNVAEG TLAAKEGDNV TGEAKEPSPL DKYFVRSKSW 120
  121 SNWLPETFET EINIEKELVG DALDQFMISL PPVPQQEEES STELASQEQE TKEDSAPVAA 180
  181 GESESSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle