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Protein Overview: ECM13

General Information:
Name(s) found: ECM13 / YBL043W [SGD]
Description(s) found:
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  • gi|6319428|ref|NP_009510.1| Non-essential protein of unknown function; Ecm13p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|586423|sp|P38195.1|ECM13_YEAST RecName: Full=Protein ECM13; AltName: Full=Extracellular mutant protein 13 [NCBI NR]
  • gi|536061|emb|CAA84863.1| ECM13 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|463266|emb|CAA55052.1| YBL405 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|45269319|gb|AAS56040.1| YBL043W [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S50288 hypothetical protein YBL043w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • (P38195) Hypothetical 28.6 kDa protein in QCR1-FUI1 intergenic region [Swiss-Prot]
  • Protein ECM13 OS=Saccharomyces cerevisiae GN=ECM13 PE=1 SV=1 [Swiss-Prot]
  • ECM13 Protein involved in cell wall structure of biosynthesis [mips]
  • Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation [SGD]
  • ECM13, Chr II from 136650-137423 [yeast_orfs2]
  • Chr II from 136650-137423 [yeastorf3.fasta]
  • ECM13 SGDID:S0000139, Chr II from 136653-137426, Verified ORF [yeastflysequest.fasta]
  • ECM13 SGDID:S0000139, Chr II from 136691-137464, Verified ORF [10112005cervSGD.fasta]
  • Ecm13p [Saccharomyces cerevisiae]gi|463266|emb|CAA55052.1| YBL405 [Saccharomyces cerevisiae]gi|536061|emb|CAA84863.1| ECM13 [Saccharomyces cerevisiae]gi|1363772|pir||S50288 hypothetical protein YBL043w - yeast (Saccharomyces cerevisiae)gi|45269319|gb| [nrdb_11152004_Chlamydomonas]
  • ECM13 SGDID:S000000139, Chr II from 136691-137464, Verified ORF, "Non-essential protein of unknown function" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • ECM13 SGDID:S000000139, Chr II from 136691-137464, Verified ORF, "Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • ECM13 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YBL043W [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YBL405 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Extracellular matrix protein 13 [nr-271106-contam.fasta]
  • Non-essential protein of unknown function; Ecm13p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Protein ECM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM13 PE=2 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • ECM13 SGDID:S000000139, Chr II from 136688-137461, Genome Release 64-1-1, Verified ORF, "Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation" [yeast-030211-contam.fasta]
  • Protein ECM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM13 PE=4 SV=1 [YEAST.fasta.20131015]
  • ECM13 SGDID:S000000139, Chr II from 136688-137461, Genome Release 64-2-1, Verified ORF, "Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; ECM13 has a paralog, YJR115W, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
  • TR2252|c0_g1_i1|g.1702 ORF TR2252|c0_g1_i1|g.1702 TR2252|c0_g1_i1|m.1702 type:complete len:258 (+) TR2252|c0_g1_i1:361-1134(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • YBL043W SGDID:S000000139, Chr II from 136688-137461, Genome Release 64-1-1, Verified ORF, "Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • ID=asmbl_4572|g.2814 ORF ID=asmbl_4572|g.2814 ID=asmbl_4572|m.2814 type:complete len:258 (+) ID=asmbl_4572:603-1376(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cellular cell wall organization [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTTPSIQD QYILASKVRS KLAKCVSVTT KNKDYNLRVL VGHANLLDKI TENVETHNAA  60
   61 TNALAGDPFS KGPENLSIEH IELSNANASK NDVGKEENAE KTIESEDYCD FYSSDEDPDA 120
  121 DTLSSTDSED DDDYEDYDFE YDYSGGDYNK KIDMYFSFHT APNYQYLTHT NSHSEQTDEL 180
  181 AESTPRYNAL PATASTTEEE QDTETLDAVS LHSSAPIFRV LSRRVNGQED DSENESSSDV 240
  241 DDGSVPLTRF HSCPITA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] MSA 4.008962 View MSA. No confident structure predictions are available.
    2 View Details [67..145] MSA 2.018983 View MSA. No confident structure predictions are available.
    3 View Details [146..257] FFAS03 1.26 Solution Structure of a Human C2H2-type Zinc Finger Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.94818133956056 bayes_pls_golite062009
  • protein binding
    		•  0.904295256065987 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.397408203611735 bayes_pls_golite062009
  • DNA binding
    		•  0.173656975405487 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle