Protein Overview: scaf6-PB

General Information:
Name(s) found:	scaf6-PB / FBpp0100053 [FlyBase]
Description(s) found: SHOW ONLY BEST	gi\|85725176\|ref\|NP_001034028.1\| scaf6, isoform B [Drosophila melanogaster] [NCBI NR] gi\|84796137\|gb\|ABC66164.1\| scaf6, isoform B [Drosophila melanogaster] [NCBI NR] The gene scaf6 is referred to in FlyBase by the symbol Dmel\scaf6 (CG33522, FBgn0053522). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:17029966..17035659. It has the cytological map location 73E5. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase] type=protein; loc=3L:complement(17033195..17033310,17033539..17033701,17034794..17035140,17035203..17035373,17035538..17035559); ID=FBpp0100053; name=scaf6-PB; parent=FBgn0053522,FBtr0100596; dbxref=FlyBase_Annotation_IDs:CG33522-PB,FlyBase:FBpp0100053,GB [fly-100309-contam.fasta] CG33522-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta] scaf6 CG33522-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta] type=protein; loc=3L:complement(17033195..17033310,17033539..17033701,17034794..17035140,17035203..17035373,17035538..17035559); ID=FBpp0100053; name=scaf6-PB; parent=FBgn0053522,FBtr0100596; dbxref=FlyBase_Annotation_IDs:CG33522-PB,FlyBase:FBpp0100053,GB_protein:ABC66164.1,REFSEQ:NP_001034028,GB_protein:ABC66164; MD5=bd214aa5e6535031777392e6ddc396e9; length=272; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=3L:complement(17033195..17033310,17033539..17033701,17034794..17035140,17035203..17035373,17035538..17035559); ID=FBpp0100053; name=scaf6-PB; parent=FBgn0053522,FBtr0100596; dbxref=FlyBase_Annotation_IDs:CG33522-PB,FlyBase:FBpp0100053,GB_protein:ABC66164.1,REFSEQ:NP_001034028,GB_protein:ABC66164; MD5=bd214aa5e6535031777392e6ddc396e9; length=272; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] Scaf6, isoform B OS=Drosophila melanogaster GN=scaf6 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
Organism:	Drosophila melanogaster
Length:	272 amino acids
Gene Ontology:
Cellular Component:	spliceosomal complex [ISS][NAS]
Biological Process:	nuclear mRNA splicing, via spliceosome [ISS][NAS]
Molecular Function:	mRNA binding [ISS][NAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQPPRDAS LRNIIDKLAE FVARNGPEFE AITKQKQQNN PKFEFLYGGE FANYYQFRVA  60
   61 AEQALLKQQA INQQLPPGAP SGHYMQHPPP MQQSQPPGLY PPPNQQPPHP PETAQDNMQQ 120
  121 QTQHSWPPNS GNGGPPNNQQ ANGNPMAMNL TSQLEAIKMQ QKSLREQIQQ SEANLSAQHT 180
  181 ALMNQKTKQI EDAIAAAQTA QQEQMAGEQG IVLRDFDGVL QPIIESCTKD SISAGKNWIL 240
  241 QHSTDSAKIN VVLQYLLKKY ASVLYLMTCN MY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: scaf6-PB

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: