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Protein Overview: gdi-1

General Information:
Name(s) found: gdi-1 / CE39445 [WormBase]
Description(s) found:
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  • WBGene00001558 locus:gdi-1 status:Partially_confirmed UniProt:Q2V4S2 protein_id:CAJ44242.1 [WormBase]
  • gi|82775242|emb|CAJ44242.1| C. elegans protein Y57G11C.10b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|115533048|ref|NP_001041044.1| GDI (RabGDP Dissociation Inhibitor) family member (gdi-1) [Caenorhabditis elegans] [NCBI NR]
  • CE39445 WBGene00001558 locus:gdi-1 status:Partially_confirmed UniProt:Q2V4S2_CAEEL protein_id:CAJ44242.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39445 WBGene00001558 locus:gdi-1 status:Partially_confirmed UniProt:Q2V4S2_CAEEL protein_id:CAJ44242.1| [wormORF-contam.fasta]
  • CE39445 WBGene00001558 locus:gdi-1 status:Partially_confirmed TR:Q2V4S2 protein_id:CAJ44242.1 [wormpep160-contam.fasta]
  • Hypothetical protein Y57G11C.10b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • GDI (RabGDP Dissociation Inhibitor) family member (gdi-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE39445 WBGene00001558 locus:gdi-1 status:Partially_confirmed UniProt:Q2V4S2 protein_id:CAJ44242.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • GDI (RabGDP Dissociation Inhibitor) family OS=Caenorhabditis elegans GN=gdi-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell death [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of GTPase activity [IEALink to PubMed article]
    Molecular Function: Rab GDP-dissociation inhibitor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEYDAIVL GTGLKECIIS GMLSVSGKKV LHIDRNNYYG GESASLTPLE QLYEKFHGPQ  60
   61 AKPQQEMGRG RDWNVDLIPK FLMANGPLVK LLIHTGVTRY LEFKSIEASF VVKGGKIYKV 120
  121 PADEMEALAT SLMGMFEKRR FKKFLVWVQQ FDENKEDTWQ GLDPHNSTMQ QVYEKFGLDE 180
  181 NTADFTGHAL ALYRDDEHKN QPYAPAVEKI RLYSDSLARY GKSPYLYPLY GLGELPQGFA 240
  241 RLSAIYGGTY MLDKPVDEIV MENGKAIGVK CGDEIVRGKQ IYCDPSYAKD RVKKTGQVVR 300
  301 AICLLNHPIP NTNDAQSCQI IIPQKQVGRH YGKFIVLEKQ RVAQKRDIYI SCCSNTNMVT 360
  361 PKGWYLAMVS TTVETANPEA EVLPGLQLLG AIAEKFIQIS DVYEPSDLGS ESQIFISQSY 420
  421 DATTHFETTC KDVLNMFERG TTKEFDFTNI THLSLNDQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..459] PSI-BLAST 123.0 GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small GTPase regulator activity
    		•  1.82777033221452 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.69589677829425 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.67690582043816 bayes_pls_golite062009
  • binding
    		•  1.28745887296004 bayes_pls_golite062009
  • enzyme regulator activity
    		•  1.00883251592654 bayes_pls_golite062009
  • amine oxidase activity
    		•  0.93095855430028 bayes_pls_golite062009
  • GDP-dissociation inhibitor activity
    		•  0.387378304822822 bayes_pls_golite062009
  • protein binding
    		•  0.347133050347128 bayes_pls_golite062009
  • transporter activity
    		•  0.0442116448779152 bayes_pls_golite062009
  • antioxidant activity
    		•  0.0209903577090486 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.00424758775661527 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle